CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
POPTR_0006s01720
(
Populus trichocarpa
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
POPTR_0006s01720
T201199_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0006s01720.1
GRAS
176
546
LKHVLLACADAVSNADIQRSAGLMHVLDQMVSVSGEPIQRLGAYMLEGLRARLELSGSKIYRALKCEAPISSDLMTYMGILYQICPYWKFAYTSANVVIREAVEYEPRIHIIDFQIAQGSQWILLMQMLACRPGGPPAIHITGVDDSQSADARGGGLDIVGQRLSKVAESCNVPFEFHDVAMDGCEVQLEHLRVQPGEAVVVNFPYVLHHMPDESVNTWNHRDRLIRMVKSLSPRIVTLIEQESNTNTKPFFPRFIETLDYYAAMFESIAAGSSMDFKQRINAEQQCVARDIVNMIACEEAERVERHELLAKWRSRFTMAGFNQYPLGSSATTAVKDLLKEYHRDYSVQERDWALYLRWRDRDMATSSAWR
Links
Other
GRAS
family TFs
Other
Populus trichocarpa
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
27529.m000047
Ricinus communis
27529.m000047
N
0.802
Ciclev10014811m.g
Citrus clementina
Ciclev10014811m.g
N
0.737
Eucgr.D01435
Eucalyptus grandis
Eucgr.D01435
N
0.729
evm.TU.supercontig_27.254
Carica papaya
evm.TU.supercontig_27.254
N
0.712
GLYMA09G01440
Glycine max
GLYMA09G01440
N
0.710
GLYMA15G12320
Glycine max
GLYMA15G12320
N
0.713
Gorai.009G184100
Gossypium raimondii
Gorai.009G184100
N
0.726
Lus10000539.g
Linum usitatissimum
Lus10000539.g
N
0.770
Lus10017554.g
Linum usitatissimum
Lus10017554.g
N
0.772
MDP0000254936
Malus domestica
MDP0000254936
N
0.702
orange1.1g008984m.g
Citrus sinensis
orange1.1g008984m.g
N
0.734
POPTR_0016s01110
Populus trichocarpa
POPTR_0016s01110
N
0.932
SapurV1A.0359s0250
Salix purpurea
SapurV1A.0359s0250
N
0.949
SapurV1A.0823s0110
Salix purpurea
SapurV1A.0823s0110
N
0.930
TCM_030393
Theobroma cacao
TCM_030393
N
0.745
SCL13
Vitis vinifera
VIT_00s0463g00020
N
0.726