CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Aa00854
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.Aa00854
T202966_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Aa00854.1.p
GRAS
2
304
HGTCRLTSPLEVALKLAAYKSFSDLSPVLQFTNFTATQALLDEIAGSTASCIHVIDFDLGVGGQWASFLQELAHRRGAGGAALPFVKLTAFVSAASHHPLELRLTRDNIAQFAADLGIAFEFNAVSADMINPAELISTTGDEVVAVVLPVGCSARAPPLPAILRLVKQLSPKIVVAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAAGIDADSACMIEKFLIQPRIEDAVLGRGKVDKPMAWRSAFTAAGFAAVPPSNLAEAQADCLLKRVQVRGFHVEKCGVGLTLYWQRGELVTVSAWR
Pavir.Aa00854.2.p
GRAS
2
304
HGTCRLTSPLEVALKLAAYKSFSDLSPVLQFTNFTATQALLDEIAGSTASCIHVIDFDLGVGGQWASFLQELAHRRGAGGAALPFVKLTAFVSAASHHPLELRLTRDNIAQFAADLGIAFEFNAVSADMINPAELISTTGDEVVAVVLPVGCSARAPPLPAILRLVKQLSPKIVVAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAAGIDADSACMIEKFLIQPRIEDAVLGRGKVDKPMAWRSAFTAAGFAAVPPSNLAEAQADCLLKRVQVRGFHVEKCGVGLTLYWQRGELVTVSAWR
Pavir.Aa00854.3.p
GRAS
2
304
HGTCRLTSPLEVALKLAAYKSFSDLSPVLQFTNFTATQALLDEIAGSTASCIHVIDFDLGVGGQWASFLQELAHRRGAGGAALPFVKLTAFVSAASHHPLELRLTRDNIAQFAADLGIAFEFNAVSADMINPAELISTTGDEVVAVVLPVGCSARAPPLPAILRLVKQLSPKIVVAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAAGIDADSACMIEKFLIQPRIEDAVLGRGKVDKPMAWRSAFTAAGFAAVPPSNLAEAQADCLLKRVQVRGFHVEKCGVGLTLYWQRGELVTVSAWR
Pavir.Aa00854.4.p
GRAS
2
304
HGTCRLTSPLEVALKLAAYKSFSDLSPVLQFTNFTATQALLDEIAGSTASCIHVIDFDLGVGGQWASFLQELAHRRGAGGAALPFVKLTAFVSAASHHPLELRLTRDNIAQFAADLGIAFEFNAVSADMINPAELISTTGDEVVAVVLPVGCSARAPPLPAILRLVKQLSPKIVVAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAAGIDADSACMIEKFLIQPRIEDAVLGRGKVDKPMAWRSAFTAAGFAAVPPSNLAEAQADCLLKRVQVRGFHVEKCGVGLTLYWQRGELVTVSAWR
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
emb2746
Arabidopsis thaliana
AT5G63420
N
0.000
Bo3g103450
Brassica oleracea
Bo3g103450
N
0.000
Bostr.0568s0468
Boechera stricta
Bostr.0568s0468
N
0.000
Bra038629
Brassica rapa
Bra038629
N
0.000
Cagra.0248s0020
Capsella grandiflora
Cagra.0248s0020
N
0.000
Carubv10027519m.g
Capsella rubella
Carubv10027519m.g
N
0.000
Ciclev10018763m.g
Citrus clementina
Ciclev10018763m.g
N
0.000
Gorai.001G059600
Gossypium raimondii
Gorai.001G059600
N
0.000
orange1.1g040954m.g
Citrus sinensis
orange1.1g040954m.g
N
0.000
POPTR_0012s09780
Populus trichocarpa
POPTR_0012s09780
N
0.000
SapurV1A.0841s0060
Salix purpurea
SapurV1A.0841s0060
N
0.000
Thhalv10003624m.g
Eutrema salsugineum
Thhalv10003624m.g
N
0.000
emb2746
Vitis vinifera
VIT_17s0000g01640
N
0.000