CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J35282
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.J35282
T203091_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J35282.1.p
GRAS
212
583
LHTLLLHCAKAVIDNRRSADELLKQIKDHASPTGDATQRLAYCFAQGLEARLAGTGSQVYRSLTADRTPLLEFLKAYQLFMSTCCFRKVAFHFANKAIFDVAIGRSKLHIVDYGLHSGFQWPELLRLLGARDGGPPEVRITSIDLPQPGFRPANHIAEMGHHLSNCARQLCVPLKFGAVVAQWHTISIDDLNVEPDEVIVINDLFNFRTLMDESVVTDRSSPRDVVLSNIAKMKPDVFVQGIINGSYGTFFLSRFREALFYHSAMFDMLDATMPRESRLRLVLERDIFGWVALNAIACEGEDRLERGETYKQWQIRNRRAGLRQLPLNRESVNMVRNIVKNQYHKDFVIEEDQQWLLQGWKGRILLAHSMWV
Pavir.J35282.2.p
GRAS
212
583
LHTLLLHCAKAVIDNRRSADELLKQIKDHASPTGDATQRLAYCFAQGLEARLAGTGSQVYRSLTADRTPLLEFLKAYQLFMSTCCFRKVAFHFANKAIFDVAIGRSKLHIVDYGLHSGFQWPELLRLLGARDGGPPEVRITSIDLPQPGFRPANHIAEMGHHLSNCARQLCVPLKFGAVVAQWHTISIDDLNVEPDEVIVINDLFNFRTLMDESVVTDRSSPRDVVLSNIAKMKPDVFVQGIINGSYGTFFLSRFREALFYHSAMFDMLDATMPRESRLRLVLERDIFGWVALNAIACEGEDRLERGETYKQWQIRNRRAGLRQLPLNRESVNMVRNIVKNQYHKDFVIEEDQQWLLQGWKGRILLAHSMWV
Pavir.J35282.3.p
GRAS
212
583
LHTLLLHCAKAVIDNRRSADELLKQIKDHASPTGDATQRLAYCFAQGLEARLAGTGSQVYRSLTADRTPLLEFLKAYQLFMSTCCFRKVAFHFANKAIFDVAIGRSKLHIVDYGLHSGFQWPELLRLLGARDGGPPEVRITSIDLPQPGFRPANHIAEMGHHLSNCARQLCVPLKFGAVVAQWHTISIDDLNVEPDEVIVINDLFNFRTLMDESVVTDRSSPRDVVLSNIAKMKPDVFVQGIINGSYGTFFLSRFREALFYHSAMFDMLDATMPRESRLRLVLERDIFGWVALNAIACEGEDRLERGETYKQWQIRNRRAGLRQLPLNRESVNMVRNIVKNQYHKDFVIEEDQQWLLQGWKGRILLAHSMWV
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CM0325.90.nc
Lotus japonicus
CM0325.90.nc
N
LjB16I02.50.nc
Lotus japonicus
LjB16I02.50.nc
N
LjB16I02.70.nc
Lotus japonicus
LjB16I02.70.nc
N
LjSGA_013316.1
Lotus japonicus
LjSGA_013316.1
N
LjSGA_014921.1
Lotus japonicus
LjSGA_014921.1
N
LjSGA_028569.1
Lotus japonicus
LjSGA_028569.1
N
LjSGA_034671.1
Lotus japonicus
LjSGA_034671.1
N
LjT38B21.250.nc
Lotus japonicus
LjT38B21.250.nc
N