AMTR_s00012p00149750 (Amborella trichopoda)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AMTR_s00012p00149750 T204375_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WUS
M06905_2.00 		Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA		 Dap-seq
OMalley et al.(2016)
WUS1_col_a 		0.779 0.719
WUS
M06906_2.00 		Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA		 Dap-seq
OMalley et al.(2016)
WUS1_colamp_a 		0.779 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN07797 Homeodomain 25 86

Links

Other Homeodomain family TFs
Other Amborella trichopoda TFs

453 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1511s0010 Capsella grandiflora Cagra.1511s0010 N
Cucsa.339580 Cucumis sativus Cucsa.339580 I
F775_30991 Aegilops tauschii F775_30991 I
GSMUA_Achr1G16280_001 Musa acuminata GSMUA_Achr1G16280_001 I
GSMUA_Achr7G25990_001 Musa acuminata GSMUA_Achr7G25990_001 N
LPERR09G05860 Leersia perrieri LPERR09G05860 I
LPERR09G13180 Leersia perrieri LPERR09G13180 I
MLOC_69710 Hordeum vulgare MLOC_69710 I
OB09G23870 Oryza brachyantha OB09G23870 I
OMERI09G12780 Oryza meridionalis OMERI09G12780 I
OPUNC09G15600 Oryza punctata OPUNC09G15600 I
HOX6 Oryza sativa OS09G0528200 D
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I
SapurV1A.0617s0090 Salix purpurea SapurV1A.0617s0090 I
SapurV1A.2485s0010 Salix purpurea SapurV1A.2485s0010 I
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I
Traes_5BL_9C32B27E2 Triticum aestivum Traes_5BL_9C32B27E2 I
Traes_5DL_96F9EED93 Triticum aestivum Traes_5DL_96F9EED93 I
TRIUR3_11780 Triticum urartu TRIUR3_11780 I