Bo8g068630 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo8g068630 T204980_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.716 0.636
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.672 0.455
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.672 0.455
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.672 0.455
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.672 0.455
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.634 0.614
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.602 0.409
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g068630.1 Homeodomain 138 184

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

1088 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BDDG_02733 Blastomyces dermatitidis BDDG_02733 I
ACLA_022420 Aspergillus clavatus CADACLAG00003042 I
CADAFLAG00003726 Aspergillus flavus CADAFLAG00003726 I
AFUA_1G13050 Aspergillus fumigatus CADAFUAG00006933 I
ANIA_00644 Aspergillus nidulans CADANIAG00002032 I
CADAORAG00006144 Aspergillus oryzae CADAORAG00006144 I
ATEG_00500 Aspergillus terreus CADATEAG00010173 I
NFIA_012470 Neosartorya fischeri CADNFIAG00001701 I
CIMG_05925 Coccidioides immitis CIMG_05925 I
CPC735_025280 Coccidioides posadasii CPC735_025280 I
fgenesh1_pg.00083_#_465 Aspergillus carbonarius fgenesh1_pg.00083_#_465 I
H101_02410 Trichophyton interdigitale H101_02410 I
H102_04072 Trichophyton rubrum H102_04072 I
H105_04102 Trichophyton soudanense H105_04102 I
HCBG_05540 Histoplasma capsulatum HCBG_05540 D
MCYG_07072 Arthroderma otae MCYG_07072 I
MCYG_07072 Microsporum canis MCYG_07072 I
MGYG_03574 Microsporum gypseum MGYG_03574 I
PAAG_00524 Paracoccidioides sp lutzii PAAG_00524 I
PABG_06783 Paracoccidioides brasiliensis PABG_06783 I
Pc13g12350 Penicillium chrysogenum Pc13g12350 I
PCH_Pc13g12350 Penicillium rubens PCH_Pc13g12350 I
PDE_00136 Penicillium oxalicum PDE_00136 I
PDIP_26540 Penicillium digitatum PDIP_26540 I
PEX1_000130 Penicillium expansum PEX1_000130 I
PITC_056440 Penicillium italicum PITC_056440 I
PMAA_067790 Talaromyces marneffei PMAA_067790 I
PMAA_067790 Penicillium marneffei PMAA_067790 I
PVAR5_5224 Byssochlamys spectabilis PVAR5_5224 I
THITE_2106736 Thielavia terrestris THITE_2106736 N
TSTA_087860 Talaromyces stipitatus TSTA_087860 I
U727_0043367121 Penicillium solitum U727_0043367121 I