CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra023506 *(Brassica rapa)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	Bra023506	T205131_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.861	0.929
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.861	0.929
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.845	0.929
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.845	0.929
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.723	0.893
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.723	0.893
ATHB-51 M00867_2.00	Arabidopsis thaliana	ATWATKNN	NNMATWAT	PBM Franco-Zorrilla et al.(2014) ATHB51	0.711	0.607
ATHB-51 M06927_2.00	Arabidopsis thaliana	DNCAATAATTGAD	HTCAATTATTGNH	Dap-seq OMalley et al.(2016) LMI1_col_a	0.711	0.607
ATHB-51 M06928_2.00	Arabidopsis thaliana	NDNCAATAATTGA	TCAATTATTGNHN	Dap-seq OMalley et al.(2016) LMI1_colamp_a	0.711	0.607
ATHB-22 M02041_2.00	Arabidopsis thaliana	NNATAATWWWNNN	NNNWWWATTATNN	PBM Weirauch et al.(2014) pTH5883	0.708	0.625
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.694	0.821
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.675	0.786
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.675	0.786
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.675	0.786
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.675	0.786
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.662	0.768
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.662	0.768
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.662	0.768
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.662	0.768
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.657	0.804
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.657	0.804
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.657	0.804
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.657	0.804
ATHB-12 M00865_2.00	Arabidopsis thaliana	NNNNNNNN	NNNNNNNN	PBM Franco-Zorrilla et al.(2014) ATHB12	0.617	0.589
ATHB-12 M02045_2.00	Arabidopsis thaliana	BHWWWWWWDV	BHWWWWWWDV	PBM Weirauch et al.(2014) pTH7207	0.617	0.589
Q39944_HELAN M10802_2.00	Helianthus annuus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HAHB4_01	0.606	0.518
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.600	0.643
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.600	0.643
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra023506.1-P	Homeodomain	92	147	EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Brassica rapa* TFs

786 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000011505	Ailuropoda melanoleuca	ENSAMEG00000011505	N	0.000
ZNF292	Bos taurus	ENSBTAG00000046612	N	0.000
ZNF292	Canis familiaris	ENSCAFG00000003045	N	0.000
ZNF292	Choloepus hoffmanni	ENSCHOG00000003324	N	0.000
ZNF292	Callithrix jacchus	ENSCJAG00000000634	N	0.000
ZNF292	Cavia porcellus	ENSCPOG00000008644	N	0.000
ENSCSAG00000017359	Chlorocebus sabaeus	ENSCSAG00000017359	N	0.000
ZNF292	Dasypus novemcinctus	ENSDNOG00000045555	N	0.000
ZNF292	Equus caballus	ENSECAG00000018906	N	0.000
ZNF292	Felis catus	ENSFCAG00000000698	N	0.000
ZNF292	Homo sapiens	ENSG00000188994	N	0.000
ZNF292	Gorilla gorilla	ENSGGOG00000008805	N	0.000
ZNF292	Loxodonta africana	ENSLAFG00000007712	N	0.000
ENSMICG00000008856	Microcebus murinus	ENSMICG00000008856	N	0.000
ZNF292	Myotis lucifugus	ENSMLUG00000002535	N	0.000
ZNF292	Macaca mulatta	ENSMMUG00000022458	N	0.000
ENSMPUG00000009584	Mustela putorius furo	ENSMPUG00000009584	N	0.000
ENSNLEG00000012921	Nomascus leucogenys	ENSNLEG00000012921	N	0.000
ENSOARG00000013132	Ovis aries	ENSOARG00000013132	N	0.000
ZNF292	Otolemur garnettii	ENSOGAG00000031301	N	0.000
ENSP00000358590	Macaca fascicularis	ENSP00000358590	N	0.000
ENSP00000358590-D1	Bos grunniens	ENSP00000358590-D1	N	0.000
ENSPPYG00000016824	Pongo abelii	ENSPPYG00000016824	N	0.000
ZNF292	Pan troglodytes	ENSPTRG00000018400	N	0.000
Zfp292	Rattus norvegicus	ENSRNOG00000031031	N	0.000
ZNF292	Sorex araneus	ENSSARG00000004191	N	0.000
ENSSTOG00000025840	Ictidomys tridecemlineatus	ENSSTOG00000025840	N	0.000
ZNF292	Tupaia belangeri	ENSTBEG00000016177	N	0.000
ENSTSYG00000012884	Tarsius syrichta	ENSTSYG00000012884	N	0.000
Myotis_brandtii_ZNF292_10002981	Myotis brandtii	Myotis_brandtii_ZNF292_10002981	N	0.000

Bra023506 (Brassica rapa) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

786 Related TFs

Bra023506 **(Brassica rapa)
Homeodomain**