CGI_10004700 (Crassostrea gigas)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 CGI_10004700 T205803_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.840 0.895
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.840 0.895
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.840 0.895
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.840 0.895
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.840 0.895
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.840 0.895
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.807 0.860
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.800 0.842
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.800 0.842
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.800 0.842
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.800 0.842
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.800 0.842
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.800 0.842
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.788 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC34186 Homeodomain 150 209

Links

Other Homeodomain family TFs
Other Crassostrea gigas TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000010859 Ailuropoda melanoleuca ENSAMEG00000010859 I
AIRE Bos taurus ENSBTAG00000023393 I
ENSBTAP00000031798-D1 Bos grunniens ENSBTAP00000031798-D1 I
AIRE Canis familiaris ENSCAFG00000010724 I
ENSCSAG00000007836 Chlorocebus sabaeus ENSCSAG00000007836 I
AIRE Equus caballus ENSECAG00000012924 I
AIRE Felis catus ENSFCAG00000007933 I
AIRE Homo sapiens ENSG00000160224 D
AIRE Gorilla gorilla ENSGGOG00000005672 I
AIRE Loxodonta africana ENSLAFG00000008582 I
AIRE Macaca mulatta ENSMMUG00000004168 I
ENSMMUP00000005576 Macaca fascicularis ENSMMUP00000005576 I
ENSOARG00000011819 Ovis aries ENSOARG00000011819 I
ENSPANG00000020902 Papio anubis ENSPANG00000020902 I
AIRE Procavia capensis ENSPCAG00000007455 I
ENSPPYG00000011482 Pongo abelii ENSPPYG00000011482 I
AIRE Pan troglodytes ENSPTRG00000013974 I
AIRE Pteropus vampyrus ENSPVAG00000011010 I
AIRE Tupaia belangeri ENSTBEG00000016828 I
AIRE Tursiops truncatus ENSTTRG00000010417 I