CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

prd-b *(Ciona intestinalis)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSCING00000012765	T207857_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
prd-b M02077_2.00	Ciona intestinalis	NTRATTRNN	NNYAATYAN	PBM Weirauch et al.(2014) pTH6284	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ENSCING00000016045 M02078_2.00	Ciona intestinalis	NNYTAATTRGN	NCYAATTARNN	PBM Weirauch et al.(2014) pTH6551	0.662	0.491
Q4RRY4_TETNG M02169_2.00	Tetraodon nigroviridis	NNYAATYAN	NTRATTRNN	PBM Weirauch et al.(2014) pTH6326	0.643	0.474
SNAPOd2T00006620001 M02231_2.00	Oikopleura dioica	NTAATTRN	NYAATTAN	PBM Weirauch et al.(2014) pTH5666	0.635	0.439
A1JVI6_MOUSE M02033_2.00	Mus musculus	HTGATTGN	NCAATCAD	PBM Weirauch et al.(2014) pTH5986	0.630	0.439
ro M06495_2.00	Drosophila melanogaster	YTAATTA	TAATTAR	B1H Mathelier et al.(2014) MA0241.1	0.628	0.491
ro M06264_2.00	Drosophila melanogaster	NYTAATTA	TAATTARN	B1H Zhu et al.(2011) Ro_Cell_FBgn0003267	0.628	0.491
ro M06265_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) Ro_SOLEXA_FBgn0003267	0.628	0.491
Duxbl1 M02099_2.00	Mus musculus	NTGATTRNN	NNYAATCAN	PBM Weirauch et al.(2014) pTH6453	0.626	0.386
ENSTNIG00000017092 M02109_2.00	Tetraodon nigroviridis	YYAATCAD	HTGATTRR	PBM Weirauch et al.(2014) pTH6064	0.623	0.386
P79681_ACIBE M02200_2.00	Acipenser baerii	DTAATTRB	VYAATTAH	PBM Weirauch et al.(2014) pTH6156	0.621	0.456
HESX1 M00309_2.00	Homo sapiens	HTAATTRGN	NCYAATTAD	PBM Barrera et al.(2016) HESX1_REF	0.621	0.421
HESX1 M00307_2.00	Homo sapiens	TAATTRNN	NNYAATTA	PBM Barrera et al.(2016) HESX1_N125S	0.621	0.421
HESX1 M00308_2.00	Homo sapiens	NATAHATRN	NYATDTATN	PBM Barrera et al.(2016) HESX1_R160C	0.621	0.404
En2 M00484_2.00	Mus musculus	NNYHATHN	NDATDRNN	PBM Berger et al.(2008) En2_0952	0.620	0.439
En1 M00519_2.00	Mus musculus	HNWTNNN	NNNAWND	PBM Berger et al.(2008) En1_3123	0.620	0.439
EN1 M03180_2.00	Homo sapiens	NNTAATTRVB	VBYAATTANN	SELEX Jolma et al.(2013) EN1_1	0.620	0.439
EN1 M03181_2.00	Homo sapiens	TAATTRSNYAATTA	TAATTRNSYAATTA	SELEX Jolma et al.(2013) EN1_2	0.620	0.439
EN1 M03182_2.00	Homo sapiens	BTAATTRN	NYAATTAV	SELEX Jolma et al.(2013) EN1_3	0.620	0.439
EN1 M03183_2.00	Homo sapiens	TDAKKRSNYMATTA	TAATKRNSYMMTHA	SELEX Jolma et al.(2013) EN1_4	0.620	0.439
EN2 M03189_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) EN2_1	0.620	0.439
EN2 M03190_2.00	Homo sapiens	VBTAATTRNN	NNYAATTAVB	SELEX Jolma et al.(2013) EN2_2	0.620	0.439
En2 M03276_2.00	Mus musculus	VBTAATTASN	NSTAATTAVB	SELEX Jolma et al.(2013) En2_1	0.620	0.439
EN1 M05218_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) EN1_eDBD_HT-SELEX	0.620	0.439
EN2 M05237_2.00	Homo sapiens	BTAATTRV	BYAATTAV	SELEX Yin et al.(2017) EN2_eDBD_HT-SELEX	0.620	0.439
EN1 M05871_2.00	Homo sapiens	VNYAATTA	TAATTRNB	SMiLE-seq Isakova et al.(2017) EN1	0.620	0.439
EN1 M10714_2.00	Homo sapiens	RTDDTBB	VVAHHAY	Transfac Matys et al.(2006) V$EN1_01	0.620	0.439
EN1 M05219_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) EN1_eDBD_Methyl-HT-SELEX_1	0.620	0.439
EN1 M05220_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) EN1_eDBD_Methyl-HT-SELEX_2	0.620	0.439
EN2 M05238_2.00	Homo sapiens	VHTDAYGHB	VDCRTHADB	SELEX Yin et al.(2017) EN2_eDBD_Methyl-HT-SELEX_1	0.620	0.439
EN2 M05239_2.00	Homo sapiens	BTAATTRV	BYAATTAV	SELEX Yin et al.(2017) EN2_eDBD_Methyl-HT-SELEX_2	0.620	0.439
en M03793_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) en_1	0.619	0.421
en M06485_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Mathelier et al.(2014) MA0220.1	0.619	0.421
inv M06491_2.00	Drosophila melanogaster	DYTAATTR	YAATTARH	B1H Mathelier et al.(2014) MA0229.1	0.619	0.421
en M06236_2.00	Drosophila melanogaster	NYTAATTR	YAATTARN	B1H Zhu et al.(2011) En_Cell_FBgn0000577	0.619	0.421
en M06237_2.00	Drosophila melanogaster	DBTAATKR	YMATTAVH	B1H Zhu et al.(2011) en_FlyReg_FBgn0000577	0.619	0.421
en M06238_2.00	Drosophila melanogaster	NNNTAATTRN	NYAATTANNN	B1H Zhu et al.(2011) en_SOLEXA_2_FBgn0000577	0.619	0.421
en M06239_2.00	Drosophila melanogaster	NTAATTR	YAATTAN	B1H Zhu et al.(2011) En_SOLEXA_FBgn0000577	0.619	0.421
inv M06255_2.00	Drosophila melanogaster	DYTAATTR	YAATTARH	B1H Zhu et al.(2011) Inv_Cell_FBgn0001269	0.619	0.421
inv M06256_2.00	Drosophila melanogaster	NHTAATTRV	BYAATTADN	B1H Zhu et al.(2011) inv_SOLEXA_2_FBgn0001269	0.619	0.421
inv M06257_2.00	Drosophila melanogaster	NHTAATTRV	BYAATTADN	B1H Zhu et al.(2011) inv_SOLEXA_5_FBgn0001269	0.619	0.421
en M09677_2.00	Drosophila melanogaster	HTAATTRN	NYAATTAD	Misc Kulakovskiy et al.(2009) en	0.619	0.421
en M10785_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$EN_Q6	0.619	0.421
ESX1 M00291_2.00	Homo sapiens	NNTRATNRN	NYNATYANN	PBM Barrera et al.(2016) ESX1_K193R	0.615	0.421
Isx M00452_2.00	Mus musculus	NNHDATNN	NNATHDNN	PBM Berger et al.(2008) Isx_3445	0.607	0.491
ISX M00319_2.00	Homo sapiens	DTAATTRK	MYAATTAH	PBM Barrera et al.(2016) ISX_REF	0.607	0.474
ISX M03218_2.00	Homo sapiens	NTAATTARATTAN	NTAATYTAATTAN	SELEX Jolma et al.(2013) ISX_1	0.607	0.474
ISX M03219_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Jolma et al.(2013) ISX_2	0.607	0.474
ISX M03220_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) ISX_3	0.607	0.474
ISX M05304_2.00	Homo sapiens	BTAATTRG	CYAATTAV	SELEX Yin et al.(2017) ISX_eDBD_HT-SELEX	0.607	0.474
ISX M05307_2.00	Homo sapiens	YTAATTRS	SYAATTAR	SELEX Yin et al.(2017) ISX_FL_HT-SELEX	0.607	0.474
ISX M00318_2.00	Homo sapiens	DTAATTRK	MYAATTAH	PBM Barrera et al.(2016) ISX_R83Q	0.607	0.474
ISX M05305_2.00	Homo sapiens	NTAATTAG	CTAATTAN	SELEX Yin et al.(2017) ISX_eDBD_Methyl-HT-SELEX_1	0.607	0.474
ISX M05306_2.00	Homo sapiens	HTAAYGHN	NDCRTTAD	SELEX Yin et al.(2017) ISX_eDBD_Methyl-HT-SELEX_2	0.607	0.474
ISX M05308_2.00	Homo sapiens	YTAATTRS	SYAATTAR	SELEX Yin et al.(2017) ISX_FL_Methyl-HT-SELEX_1	0.607	0.474
ISX M05309_2.00	Homo sapiens	HTAAYGHN	NDCRTTAD	SELEX Yin et al.(2017) ISX_FL_Methyl-HT-SELEX_2	0.607	0.474
lim-4 M02182_2.00	Caenorhabditis elegans	YTAATTRVN	NBYAATTAR	PBM Weirauch et al.(2014) pTH6366	0.604	0.351
Gbx2 M00462_2.00	Mus musculus	NNDAHNN	NNDTHNN	PBM Berger et al.(2008) Gbx2_3110	0.604	0.421
Gbx1 M00525_2.00	Mus musculus	NNTAATNR	YNATTANN	PBM Berger et al.(2008) Gbx1_2883	0.604	0.421
GBX1 M03193_2.00	Homo sapiens	NBTAATTRSB	VSYAATTAVN	SELEX Jolma et al.(2013) GBX1_1	0.604	0.421
GBX2 M03201_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) GBX2_1	0.604	0.421
GBX2 M03202_2.00	Homo sapiens	TAATTRVBCAATWA	TWATTGVBYAATTA	SELEX Jolma et al.(2013) GBX2_2	0.604	0.421
GBX2 M03203_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) GBX2_3	0.604	0.421
Gbx1 M03286_2.00	Mus musculus	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) Gbx1_1	0.604	0.421
Gbx2 M03268_2.00	Mus musculus	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) Gbx2_1	0.604	0.421
GBX2 M05265_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_eDBD_HT-SELEX	0.604	0.421
GBX2 M05268_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) GBX2_FL_HT-SELEX	0.604	0.421
GBX2 M05266_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) GBX2_eDBD_Methyl-HT-SELEX_1	0.604	0.421
GBX2 M05267_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_eDBD_Methyl-HT-SELEX_2	0.604	0.421
GBX2 M05269_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_FL_Methyl-HT-SELEX_1	0.604	0.421
GBX2 M05270_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) GBX2_FL_Methyl-HT-SELEX_2	0.604	0.421
unpg M03836_2.00	Drosophila melanogaster	SSTAATYRVN	NBYRATTASS	SELEX Nitta et al.(2015) unpg_1	0.604	0.404
unpg M06517_2.00	Drosophila melanogaster	BTAATTR	YAATTAV	B1H Mathelier et al.(2014) MA0251.1	0.604	0.404
unpg M06311_2.00	Drosophila melanogaster	NBTAATTR	YAATTAVN	B1H Zhu et al.(2011) Unpg_Cell_FBgn0015561	0.604	0.404
unpg M06312_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) Unpg_SOLEXA_FBgn0015561	0.604	0.404
al M03776_2.00	Drosophila melanogaster	TAAYBNVRTTA	TAAYBNVRTTA	SELEX Nitta et al.(2015) al_1	0.603	0.474
Pph13 M03845_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) Pph13_1	0.603	0.474
al M06477_2.00	Drosophila melanogaster	TAATTAA	TTAATTA	B1H Mathelier et al.(2014) MA0208.1	0.603	0.474
Pph13 M06522_2.00	Drosophila melanogaster	NTAATTR	YAATTAN	B1H Mathelier et al.(2014) MA0200.1	0.603	0.474
al M06212_2.00	Drosophila melanogaster	TAATTAA	TTAATTA	B1H Zhu et al.(2011) Al_Cell_FBgn0000061	0.603	0.474
al M06213_2.00	Drosophila melanogaster	NNYTAATTR	YAATTARNN	B1H Zhu et al.(2011) Al_SOLEXA_FBgn0000061	0.603	0.474
Pph13 M06321_2.00	Drosophila melanogaster	NHTAATTR	YAATTADN	B1H Zhu et al.(2011) Pph13_Cell_FBgn0023489	0.603	0.474
Pph13 M06322_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Zhu et al.(2011) Pph13_SOLEXA_FBgn0023489	0.603	0.474
HESX1 M00306_2.00	Homo sapiens	WRATDRNN	NNYHATYW	PBM Barrera et al.(2016) HESX1_E149K	0.600	0.404
Awh M02121_2.00	Drosophila melanogaster	NNTAATTANN	NNTAATTANN	PBM Weirauch et al.(2014) pTH5759	0.600	0.333
Awh M03831_2.00	Drosophila melanogaster	BTAATTRV	BYAATTAV	SELEX Nitta et al.(2015) Awh_1	0.600	0.333
Awh M06513_2.00	Drosophila melanogaster	YTAATTA	TAATTAR	B1H Mathelier et al.(2014) MA0167.1	0.600	0.333
Awh M06303_2.00	Drosophila melanogaster	YTAATTA	TAATTAR	B1H Zhu et al.(2011) Awh_Cell_FBgn0013751	0.600	0.333
Awh M06304_2.00	Drosophila melanogaster	YTAATKR	YMATTAR	B1H Zhu et al.(2011) Awh_SOLEXA_FBgn0013751	0.600	0.333
PHOX2B M00282_2.00	Homo sapiens	TAATTRRY	RYYAATTA	PBM Barrera et al.(2016) PHOX2B_REF	0.599	0.456
Phox2a M00400_2.00	Mus musculus	NNHAAYNN	NNRTTDNN	PBM Berger et al.(2008) Phox2a_3947	0.599	0.456
Phox2b M00401_2.00	Mus musculus	NNHAAYNN	NNRTTDNN	PBM Berger et al.(2008) Phox2b_3948	0.599	0.456
PHOX2A M03194_2.00	Homo sapiens	TAATTRVRTTA	TAAYBYAATTA	SELEX Jolma et al.(2013) PHOX2A_1	0.599	0.456
PHOX2B M03113_2.00	Homo sapiens	TAATTRVRTTA	TAAYBYAATTA	SELEX Jolma et al.(2013) PHOX2B_1	0.599	0.456
PHOX2B M03114_2.00	Homo sapiens	TAATTRVRTTA	TAAYBYAATTA	SELEX Jolma et al.(2013) PHOX2B_2	0.599	0.456
PHOX2A M05244_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) PHOX2A_eDBD_HT-SELEX	0.599	0.456
PHOX2B M05008_2.00	Homo sapiens	BTAATYRV	BYRATTAV	SELEX Yin et al.(2017) PHOX2B_eDBD_HT-SELEX	0.599	0.456
PHOX2B M05010_2.00	Homo sapiens	TAATTWRATTA	TAATYWAATTA	SELEX Yin et al.(2017) PHOX2B_FL_HT-SELEX	0.599	0.456
Phox2a M09564_2.00	Mus musculus	NTAATBNRATTA	TAATYNVATTAN	Misc Heinz et al.(2010) Neuron-Phox2a_GSE31456	0.599	0.456
PHOX2B M00278_2.00	Homo sapiens	NNNNNRY	RYNNNNN	PBM Barrera et al.(2016) PHOX2B_Q143R	0.599	0.456
PHOX2B M00280_2.00	Homo sapiens	NNNHATAAWTDNN	NNHAWTTATDNNN	PBM Barrera et al.(2016) PHOX2B_R141G	0.599	0.456
PHOX2B M00281_2.00	Homo sapiens	NNNNNNNNRY	RYNNNNNNNN	PBM Barrera et al.(2016) PHOX2B_R141Q	0.599	0.456
PHOX2A M05245_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) PHOX2A_eDBD_Methyl-HT-SELEX	0.599	0.456
PHOX2B M05009_2.00	Homo sapiens	BTAATYRN	NYRATTAV	SELEX Yin et al.(2017) PHOX2B_eDBD_Methyl-HT-SELEX	0.599	0.456
PHOX2B M05011_2.00	Homo sapiens	TAATTHRATTA	TAATYDAATTA	SELEX Yin et al.(2017) PHOX2B_FL_Methyl-HT-SELEX	0.599	0.456
DRGX M03199_2.00	Homo sapiens	NTAATTNRATTAN	NTAATYNAATTAN	SELEX Jolma et al.(2013) DRGX_1	0.599	0.439
CG2808 M03875_2.00	Drosophila melanogaster	TAATYNSRTTA	TAAYSNRATTA	SELEX Nitta et al.(2015) CG2808_1	0.599	0.439
DRGX M05253_2.00	Homo sapiens	NTAATTRR	YYAATTAN	SELEX Yin et al.(2017) DRGX_eDBD_HT-SELEX	0.599	0.439
Drgx M10774_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PRRXL1_01	0.599	0.439
DRGX M05254_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) DRGX_eDBD_Methyl-HT-SELEX	0.599	0.439
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M02077_2.00	Homeodomain	1	57	SRGRTTYSVDQITELEKLFTRNAYPTPQSRQELARNIRVPEGKVKIWFQNRRARAKK

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSCINP00000023689	Homeodomain	153	209	SRGRTTYSVDQITELEKLFTRNAYPTPQSRQELARNIRVPEGKVKIWFQNRRARAKK

Links
Other Homeodomain family TFs
Other *Ciona intestinalis* TFs

1325 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL005974	Aedes aegypti	AAEL005974	I
AAEL012150	Aedes aegypti	AAEL012150	I
Aan_R006646	Calypte anna	Aan_R006646	I
Aan_R009530	Calypte anna	Aan_R009530	I
Aan_R012348	Calypte anna	Aan_R012348	I
AATE018929	Anopheles atroparvus	AATE018929	I
ACEP14997	Atta cephalotes	ACEP14997	I
ACOM031223	Anopheles coluzzii	ACOM031223	I
ACYPI27939	Acyrthosiphon pisum	ACYPI27939	I
ACYPI48371	Acyrthosiphon pisum	ACYPI48371	I
ADIR004110	Anopheles dirus	ADIR004110	I
Afo_R000355	Aptenodytes forsteri	Afo_R000355	I
Afo_R010414	Aptenodytes forsteri	Afo_R010414	I
AFUN003184	Anopheles funestus	AFUN003184	I
AGAP005727	Anopheles gambiae	AGAP005727	I
Alligator_sinensis_CCG013033.1	Alligator sinensis	Alligator_sinensis_CCG013033.1	I
AMEM006151	Anopheles merus	AMEM006151	I
ASIS013776	Anopheles sinensis	ASIS013776	I
BGIBMGA008482	Bombyx mori	BGIBMGA008482	I
BGLB013811	Biomphalaria glabrata	BGLB013811	I
Brh_R002799	Buceros rhinoceros	Brh_R002799	I
Brh_R003637	Buceros rhinoceros	Brh_R003637	I
CapteG173964	Capitella teleta	CapteG173964	I
CapteG220261	Capitella teleta	CapteG220261	I
Cflo_10458--XP_001121170.1_APIME	Camponotus floridanus	Cflo_10458--XP_001121170.1_APIME	I
CGI_10002480	Crassostrea gigas	CGI_10002480	I
CGI_10013972	Crassostrea gigas	CGI_10013972	I
CLEC011407	Cimex lectularius	CLEC011407	I
Cmyd_10016425	Chelonia mydas	Cmyd_10016425	I
D917_00900	Trichinella nativa	D917_00900	I
DAPPUDRAFT_37379	Daphnia pulex	DAPPUDRAFT_37379	I
DAPPUDRAFT_53297	Daphnia pulex	DAPPUDRAFT_53297	I
EFV57815	Trichinella spiralis	EFV57815	I
ENSACAG00000002581	Anolis carolinensis	ENSACAG00000002581	I
ENSACAG00000015317	Anolis carolinensis	ENSACAG00000015317	I
DBX1	Anolis carolinensis	ENSACAG00000015625	I
ENSAMEG00000010272	Ailuropoda melanoleuca	ENSAMEG00000010272	I
ENSAMEG00000015811	Ailuropoda melanoleuca	ENSAMEG00000015811	I
ENSAMXG00000009415	Astyanax mexicanus	ENSAMXG00000009415	I
ENSAMXG00000012905	Astyanax mexicanus	ENSAMXG00000012905	I
ENSAMXG00000013419	Astyanax mexicanus	ENSAMXG00000013419	I
ENSAMXG00000014548	Astyanax mexicanus	ENSAMXG00000014548	I
ENSAMXG00000016737	Astyanax mexicanus	ENSAMXG00000016737	I
ENSAPLG00000011161	Anas platyrhynchos	ENSAPLG00000011161	I
ENSAPLG00000013752	Anas platyrhynchos	ENSAPLG00000013752	I
DBX1	Bos taurus	ENSBTAG00000002733	I
DBX2	Bos taurus	ENSBTAG00000006635	I
HLX	Bos taurus	ENSBTAG00000014560	I
ENSBTAP00000003543-D1	Bos grunniens	ENSBTAP00000003543-D1	I
ENSBTAP00000019352-D1	Bos grunniens	ENSBTAP00000019352-D1	I
ENSCAFG00000009372	Canis familiaris	ENSCAFG00000009372	I
HLX	Canis familiaris	ENSCAFG00000011340	I
ENSCING00000012835	Ciona intestinalis	ENSCING00000012835	I
hlx	Ciona intestinalis	ENSCING00000019191	I
HLX	Callithrix jacchus	ENSCJAG00000006110	I
DBX1	Callithrix jacchus	ENSCJAG00000006734	I
DBX2	Callithrix jacchus	ENSCJAG00000013213	I
ENSCPOG00000011069	Cavia porcellus	ENSCPOG00000011069	I
DBX1	Cavia porcellus	ENSCPOG00000019811	I
HLX	Cavia porcellus	ENSCPOG00000024028	I
ENSCSAG00000005115	Chlorocebus sabaeus	ENSCSAG00000005115	I
ENSCSAG00000015879	Chlorocebus sabaeus	ENSCSAG00000015879	I
dbx1b	Danio rerio	ENSDARG00000001859	I
hlx1	Danio rerio	ENSDARG00000009134	I
nanog	Danio rerio	ENSDARG00000075113	I
dbx1a	Danio rerio	ENSDARG00000086393	I
CABZ01093502.1	Danio rerio	ENSDARG00000105053	I
HLX	Dasypus novemcinctus	ENSDNOG00000007014	I
DBX1	Dasypus novemcinctus	ENSDNOG00000015450	I
DBX2	Dasypus novemcinctus	ENSDNOG00000046429	I
Hlx	Dipodomys ordii	ENSDORG00000001941	I
HLX	Equus caballus	ENSECAG00000003025	I
DBX2	Equus caballus	ENSECAG00000012695	I
DBX1	Equus caballus	ENSECAG00000019994	I
HLX	Erinaceus europaeus	ENSEEUG00000004973	I
ENSEEUG00000006518	Erinaceus europaeus	ENSEEUG00000006518	I
ENSEEUG00000014300	Erinaceus europaeus	ENSEEUG00000014300	N
ENSFALG00000001676	Ficedula albicollis	ENSFALG00000001676	I
ENSFALG00000010170	Ficedula albicollis	ENSFALG00000010170	I
HLX	Felis catus	ENSFCAG00000002974	I
DBX1	Homo sapiens	ENSG00000109851	I
HLX	Homo sapiens	ENSG00000136630	I
DBX2	Homo sapiens	ENSG00000185610	I
ENSGACG00000000220	Gasterosteus aculeatus	ENSGACG00000000220	I
ENSGACG00000004000	Gasterosteus aculeatus	ENSGACG00000004000	I
hlx1	Gasterosteus aculeatus	ENSGACG00000010057	I
DBX1	Gasterosteus aculeatus	ENSGACG00000014112	I
DBX1	Gallus gallus	ENSGALG00000003965	I
DBX2	Gallus gallus	ENSGALG00000009604	I
HLX	Gorilla gorilla	ENSGGOG00000002735	I
DBX2	Gorilla gorilla	ENSGGOG00000004664	I
ENSGMOG00000001751	Gadus morhua	ENSGMOG00000001751	I
ENSGMOG00000003244	Gadus morhua	ENSGMOG00000003244	I
ENSGMOG00000009056	Gadus morhua	ENSGMOG00000009056	I
ENSLACG00000003968	Latimeria chalumnae	ENSLACG00000003968	I
ENSLACG00000008955	Latimeria chalumnae	ENSLACG00000008955	I
ENSLACG00000011299	Latimeria chalumnae	ENSLACG00000011299	I
HLX	Loxodonta africana	ENSLAFG00000001289	I
DBX2	Loxodonta africana	ENSLAFG00000005006	I
DBX1	Loxodonta africana	ENSLAFG00000007378	I
ENSLOCG00000004886	Lepisosteus oculatus	ENSLOCG00000004886	I
ENSLOCG00000016392	Lepisosteus oculatus	ENSLOCG00000016392	I
ENSLOCG00000016431	Lepisosteus oculatus	ENSLOCG00000016431	I
ENSMEUG00000016510	Macropus eugenii	ENSMEUG00000016510	I
ENSMGAG00000002299	Meleagris gallopavo	ENSMGAG00000002299	I
ENSMGAG00000009614	Meleagris gallopavo	ENSMGAG00000009614	I
ENSMICG00000005919	Microcebus murinus	ENSMICG00000005919	I
ENSMICG00000007764	Microcebus murinus	ENSMICG00000007764	I
ENSMLUG00000007038	Myotis lucifugus	ENSMLUG00000007038	I
HLX	Myotis lucifugus	ENSMLUG00000015571	I
ENSMMUG00000022290	Macaca mulatta	ENSMMUG00000022290	I
HLX	Monodelphis domestica	ENSMODG00000004664	I
DBX1	Monodelphis domestica	ENSMODG00000009081	I
DBX2	Monodelphis domestica	ENSMODG00000018530	I
ENSMPUG00000000372	Mustela putorius furo	ENSMPUG00000000372	I
ENSMPUG00000003954	Mustela putorius furo	ENSMPUG00000003954	I
ENSMPUG00000013914	Mustela putorius furo	ENSMPUG00000013914	I
Dbx1	Mus musculus	ENSMUSG00000030507	D
Hlx	Mus musculus	ENSMUSG00000039377	D
Dbx2	Mus musculus	ENSMUSG00000045608	D
ENSNLEG00000013773	Nomascus leucogenys	ENSNLEG00000013773	I
ENSNLEG00000017924	Nomascus leucogenys	ENSNLEG00000017924	I
ENSOANG00000001435	Ornithorhynchus anatinus	ENSOANG00000001435	I
ENSOARG00000008379	Ovis aries	ENSOARG00000008379	I
ENSOARG00000013206	Ovis aries	ENSOARG00000013206	I
ENSOARG00000019598	Ovis aries	ENSOARG00000019598	I
HLX	Oryctolagus cuniculus	ENSOCUG00000006015	I
DBX1	Oryctolagus cuniculus	ENSOCUG00000007615	I
ENSOCUG00000022068	Oryctolagus cuniculus	ENSOCUG00000022068	I
DBX2	Otolemur garnettii	ENSOGAG00000008999	I
HLX	Otolemur garnettii	ENSOGAG00000012065	I
DBX1	Otolemur garnettii	ENSOGAG00000014591	I
ENSONIG00000005980	Oreochromis niloticus	ENSONIG00000005980	I
ENSONIG00000007144	Oreochromis niloticus	ENSONIG00000007144	I
ENSONIG00000008764	Oreochromis niloticus	ENSONIG00000008764	I
ENSONIG00000012709	Oreochromis niloticus	ENSONIG00000012709	I
HLX	Ochotona princeps	ENSOPRG00000011504	I
dbx1b	Oryzias latipes	ENSORLG00000000807	I
ENSORLG00000002970	Oryzias latipes	ENSORLG00000002970	I
hlx1	Oryzias latipes	ENSORLG00000012055	I
DBX1	Oryzias latipes	ENSORLG00000014512	I
ENSP00000331470	Macaca fascicularis	ENSP00000331470	I
ENSP00000331470-D1	Bos grunniens	ENSP00000331470-D1	I
ENSPANG00000005953	Papio anubis	ENSPANG00000005953	I
ENSPANG00000010481	Papio anubis	ENSPANG00000010481	I
DBX2	Procavia capensis	ENSPCAG00000006299	I
HLX	Procavia capensis	ENSPCAG00000012295	I
ENSPFOG00000004028	Poecilia formosa	ENSPFOG00000004028	I
ENSPFOG00000008292	Poecilia formosa	ENSPFOG00000008292	I
ENSPFOG00000009708	Poecilia formosa	ENSPFOG00000009708	I
ENSPFOG00000014727	Poecilia formosa	ENSPFOG00000014727	I
ENSPFOG00000018919	Poecilia formosa	ENSPFOG00000018919	I
ENSPMAG00000000895	Petromyzon marinus	ENSPMAG00000000895	I
ENSPMAG00000004878	Petromyzon marinus	ENSPMAG00000004878	I
ENSPMAG00000009840	Petromyzon marinus	ENSPMAG00000009840	I
ENSPPYG00000000202	Pongo abelii	ENSPPYG00000000202	I
ENSPPYG00000004431	Pongo abelii	ENSPPYG00000004431	I
ENSPSIG00000009557	Pelodiscus sinensis	ENSPSIG00000009557	I
ENSPSIG00000012138	Pelodiscus sinensis	ENSPSIG00000012138	I
ENSPSIG00000013519	Pelodiscus sinensis	ENSPSIG00000013519	I
HLX	Pan troglodytes	ENSPTRG00000002004	I
DBX2	Pan troglodytes	ENSPTRG00000004849	I
HLX	Pteropus vampyrus	ENSPVAG00000004552	I
Hlx	Rattus norvegicus	ENSRNOG00000002309	I
Dbx2	Rattus norvegicus	ENSRNOG00000006885	I
Dbx1	Rattus norvegicus	ENSRNOG00000014706	I
ENSSARG00000007797	Sorex araneus	ENSSARG00000007797	I
ENSSHAG00000011774	Sarcophilus harrisii	ENSSHAG00000011774	I
ENSSHAG00000012054	Sarcophilus harrisii	ENSSHAG00000012054	I
ENSSHAG00000012659	Sarcophilus harrisii	ENSSHAG00000012659	I
ENSSSCG00000010830	Sus scrofa	ENSSSCG00000010830	I
DBX1	Sus scrofa	ENSSSCG00000013350	I
ENSSTOG00000000232	Ictidomys tridecemlineatus	ENSSTOG00000000232	I
ENSSTOG00000006326	Ictidomys tridecemlineatus	ENSSTOG00000006326	I
ENSSTOG00000015557	Ictidomys tridecemlineatus	ENSSTOG00000015557	I
DBX2	Tupaia belangeri	ENSTBEG00000012639	I
HLX	Tupaia belangeri	ENSTBEG00000014384	I
DBX2	Taeniopygia guttata	ENSTGUG00000006020	I
DBX1	Taeniopygia guttata	ENSTGUG00000015791	I
DBX1	Tetraodon nigroviridis	ENSTNIG00000004855	I
dbx1b	Tetraodon nigroviridis	ENSTNIG00000009613	I
ENSTNIG00000015979	Tetraodon nigroviridis	ENSTNIG00000015979	I
hlx1	Tetraodon nigroviridis	ENSTNIG00000016400	I
hlx1	Takifugu rubripes	ENSTRUG00000006753	I
dbx1b	Takifugu rubripes	ENSTRUG00000015886	I
ENSTRUG00000016696	Takifugu rubripes	ENSTRUG00000016696	I
ENSTSYG00000001451	Tarsius syrichta	ENSTSYG00000001451	I
DBX2	Tursiops truncatus	ENSTTRG00000003582	I
ENSVPAG00000000460	Vicugna pacos	ENSVPAG00000000460	I
ENSXMAG00000004689	Xiphophorus maculatus	ENSXMAG00000004689	I
ENSXMAG00000006476	Xiphophorus maculatus	ENSXMAG00000006476	I
ENSXMAG00000010186	Xiphophorus maculatus	ENSXMAG00000010186	I
ENSXMAG00000017389	Xiphophorus maculatus	ENSXMAG00000017389	I
H2.0	Drosophila melanogaster	FBgn0001170	D
GA11095	Drosophila pseudoobscura	FBgn0071150	I
GA11582	Drosophila pseudoobscura	FBgn0071633	I
GF14286	Drosophila ananassae	FBgn0091313	I
GF20095	Drosophila ananassae	FBgn0097102	I
GG10151	Drosophila erecta	FBgn0102462	I
GG14836	Drosophila erecta	FBgn0107091	I
GH10711	Drosophila grimshawi	FBgn0118192	I
GH16166	Drosophila grimshawi	FBgn0123637	I
GI11292	Drosophila mojavensis	FBgn0134053	I
GI13319	Drosophila mojavensis	FBgn0136076	I
GL19089	Drosophila persimilis	FBgn0156689	I
GL25317	Drosophila persimilis	FBgn0162901	I
GM14459	Drosophila sechellia	FBgn0169382	I
GM17974	Drosophila sechellia	FBgn0172881	I
GD22610	Drosophila simulans	FBgn0194011	I
GJ12089	Drosophila virilis	FBgn0199341	I
GJ12503	Drosophila virilis	FBgn0199743	I
GK12528	Drosophila willistoni	FBgn0214538	I
GK15402	Drosophila willistoni	FBgn0217407	I
GE18959	Drosophila yakuba	FBgn0236329	I
GE21201	Drosophila yakuba	FBgn0238476	I
Dbx	Drosophila melanogaster	FBgn0261723	D
fgenesh2_pg.scaffold_222000058	Branchiostoma floridae	fgenesh2_pg.scaffold_222000058	I
GB42897	Apis mellifera	GB42897	I
GB49362	Apis mellifera	GB49362	I
Gfo_R004056	Geospiza fortis	Gfo_R004056	I
gw.473.22.1	Branchiostoma floridae	gw.473.22.1	I
gw.83.80.1	Branchiostoma floridae	gw.83.80.1	I
HelroG148518	Helobdella robusta	HelroG148518	I
HelroG74087	Helobdella robusta	HelroG74087	I
HHAL002166-PA	Halyomorpha halys	HHAL002166-PA	I
Hsal_11910--XP_001121170.1_APIME	Harpegnathos saltator	Hsal_11910--XP_001121170.1_APIME	I
ISCW020093	Ixodes scapularis	ISCW020093	I
KGM_12383	Danaus plexippus	KGM_12383	I
KGM_21891	Danaus plexippus	KGM_21891	I
L798_13412	Zootermopsis nevadensis	L798_13412	I
LCUP007749	Lucilia cuprina	LCUP007749	I
LDEC019190	Leptinotarsa decemlineata	LDEC019190	I
LLOJ006552	Lutzomyia longipalpis	LLOJ006552	I
LotgiG64310	Lottia gigantea	LotgiG64310	I
LotgiG80492	Lottia gigantea	LotgiG80492	I
MDOA007091	Musca domestica	MDOA007091	I
MDOA015219	Musca domestica	MDOA015219	I
Myotis_brandtii_DBX2_10029487	Myotis brandtii	Myotis_brandtii_DBX2_10029487	I
NEMVEDRAFT_v1g100892	Nematostella vectensis	NEMVEDRAFT_v1g100892	I
NEMVEDRAFT_v1g80365	Nematostella vectensis	NEMVEDRAFT_v1g80365	I
nRc.2.0.1.g17174	Romanomermis culicivorax	nRc.2.0.1.g17174	I
NV18099	Nasonia vitripennis	NV18099	I
Ocbimv22005553m.g	Octopus bimaculoides	Ocbimv22005553m.g	I
Ogr19305	Ophisaurus gracilis	Ogr19305	I
PHUM365830	Pediculus humanus	PHUM365830	I
PHUM604510	Pediculus humanus	PHUM604510	I
Pvit_06412	Pogona vitticeps	Pvit_06412	I
Pvit_11516	Pogona vitticeps	Pvit_11516	I
Pvit_13000	Pogona vitticeps	Pvit_13000	I
RPRC002486	Rhodnius prolixus	RPRC002486	I
RPRC010617	Rhodnius prolixus	RPRC010617	I
Sakowv30040055m.g	Saccoglossus kowalevskii	Sakowv30040055m.g	I
Sakowv30044972m.g	Saccoglossus kowalevskii	Sakowv30044972m.g	I
SINV11867	Solenopsis invicta	SINV11867	I
SMAR002236	Strigamia maritima	SMAR002236	I
SMU15029512	Schmidtea mediterranea	SMU15029512	I
SMU15032021	Schmidtea mediterranea	SMU15032021	I
SPU_014802	Strongylocentrotus purpuratus	SPU_014802	I
Tal_R005491	Tyto alba	Tal_R005491	I
Tal_R010631	Tyto alba	Tal_R010631	I
TC008368	Tribolium castaneum	TC008368	I
TC015146	Tribolium castaneum	TC015146	I
tetur05g09190	Tetranychus urticae	tetur05g09190	I
tetur22g00030	Tetranychus urticae	tetur22g00030	I
TriadG18102	Trichoplax adhaerens	TriadG18102	I
dbx1	Xenopus tropicalis	XB-GENE-480177	I
dbx2	Xenopus tropicalis	XB-GENE-481734	I
hlx	Xenopus tropicalis	XB-GENE-483226	I
dbx2.L	Xenopus laevis	XB-GENE-6486281	I
dbx1.S	Xenopus laevis	XB-GENE-865351	I
YQE_05944	Dendroctonus ponderosae	YQE_05944	I

prd-b (Ciona intestinalis) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

Experimental Constructs

DNA Binding Domains

Links

1325 Related TFs

prd-b **(Ciona intestinalis)
Homeodomain**