SIX6 (Cavia porcellus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCPOG00000023314 T208198_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.867 1.000
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.867 1.000
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.867 1.000
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.867 1.000
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000021098 Homeodomain 143 199

Links

Other Homeodomain family TFs
Other Cavia porcellus TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB008493 Anopheles albimanus AALB008493 N
AARA000520 Anopheles arabiensis AARA000520 N
ACEP18777 Atta cephalotes ACEP18777 N
ACHR005918 Anopheles christyi ACHR005918 N
ACUA028082 Anopheles culicifacies ACUA028082 N
ADIR000207 Anopheles dirus ADIR000207 N
AGAP011712 Anopheles gambiae AGAP011712 N
AMEC005290 Anopheles melas AMEC005290 N
AMEC018160 Anopheles melas AMEC018160 N
AMEM014364 Anopheles merus AMEM014364 N
AMIN008749 Anopheles minimus AMIN008749 N
ANCCAN_02907 Ancylostoma caninum ANCCAN_02907 N
ASIS020776 Anopheles sinensis ASIS020776 N
ASTEI10438 Anopheles stephensi ASTEI10438 N
BGIBMGA006719 Bombyx mori BGIBMGA006719 N
Cflo_07689--XP_001122560.1_APIME Camponotus floridanus Cflo_07689--XP_001122560.1_APIME N
CPIJ000721 Culex quinquefasciatus CPIJ000721 N
CpipJ_CPIJ000721 Culex pipiens CpipJ_CPIJ000721 N
ECANG7_07880 Echinococcus canadensis ECANG7_07880 N
ENSACAG00000011860 Anolis carolinensis ENSACAG00000011860 N
TBR1 Callithrix jacchus ENSCJAG00000005603 I
ENSECAG00000018160 Equus caballus ENSECAG00000018160 N
TBR1 Homo sapiens ENSG00000136535 D
Tbx22 Mus musculus ENSMUSG00000031241 I
ENSOANG00000020395 Ornithorhynchus anatinus ENSOANG00000020395 I
ENSOANG00000028644 Ornithorhynchus anatinus ENSOANG00000028644 N
ENSTGUG00000006709 Taeniopygia guttata ENSTGUG00000006709 N
GG18707 Drosophila erecta FBgn0110916 N
GD16691 Drosophila simulans FBgn0188280 N
Hsal_04126--XP_001122560.1_APIME Harpegnathos saltator Hsal_04126--XP_001122560.1_APIME I
ISCW019287 Ixodes scapularis ISCW019287 N
LCUP008640 Lucilia cuprina LCUP008640 N
LDEC010813 Leptinotarsa decemlineata LDEC010813 N
MCINX008208 Melitaea cinxia MCINX008208 N
Ocbimv22001571m.g Octopus bimaculoides Ocbimv22001571m.g N
SPU_020346 Strongylocentrotus purpuratus SPU_020346 N
Tal_R010698 Tyto alba Tal_R010698 N
TC015796 Tribolium castaneum TC015796 N
TELCIR_17829 Teladorsagia circumcincta TELCIR_17829 N
YQE_10906 Dendroctonus ponderosae YQE_10906 N