irx4b (Danio rerio)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSDARG00000036051 T208593_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.867 1.000
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.790 0.929
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.788 0.929
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.788 0.929
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.788 0.929
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.780 0.893
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.780 0.893
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.780 0.893
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.780 0.893
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.780 0.893
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.780 0.893
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.780 0.893
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.780 0.893
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.780 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000052337 Homeodomain 141 199
ENSDARP00000114928 Homeodomain 141 199

Links

Other Homeodomain family TFs
Other Danio rerio TFs

390 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R010550 Calypte anna Aan_R010550 I
Afo_R015982 Aptenodytes forsteri Afo_R015982 I
Cmyd_10021233 Chelonia mydas Cmyd_10021233 I
MSANTD3 Anolis carolinensis ENSACAG00000025458 I
ENSAMEG00000014972 Ailuropoda melanoleuca ENSAMEG00000014972 I
ENSAPLG00000013833 Anas platyrhynchos ENSAPLG00000013833 I
MSANTD3 Bos taurus ENSBTAG00000037580 I
ENSBTAP00000042141-D1 Bos grunniens ENSBTAP00000042141-D1 I
MSANTD3-TMEFF1 Canis familiaris ENSCAFG00000002577 I
MSANTD3-TMEFF1 Callithrix jacchus ENSCJAG00000011484 I
ENSCSAG00000011159 Chlorocebus sabaeus ENSCSAG00000011159 I
MSANTD3 Dasypus novemcinctus ENSDNOG00000035872 I
MSANTD3 Equus caballus ENSECAG00000021233 I
ENSFALG00000004875 Ficedula albicollis ENSFALG00000004875 I
MSANTD3-TMEFF1 Felis catus ENSFCAG00000030912 I
MSANTD3 Homo sapiens ENSG00000066697 D
MSANTD3 Gallus gallus ENSGALG00000013403 I
ENSGGOG00000026943 Gorilla gorilla ENSGGOG00000026943 I
MSANTD3 Loxodonta africana ENSLAFG00000031827 I
MSANTD3 Meleagris gallopavo ENSMGAG00000007604 I
MSANTD3 Myotis lucifugus ENSMLUG00000029223 I
MSANTD3-TMEFF1 Macaca mulatta ENSMMUG00000009775 I
MSANTD3 Monodelphis domestica ENSMODG00000012608 I
ENSMPUG00000006828 Mustela putorius furo ENSMPUG00000006828 I
Msantd3 Mus musculus ENSMUSG00000039693 I
ENSNLEG00000017101 Nomascus leucogenys ENSNLEG00000017101 I
MSANTD3 Ornithorhynchus anatinus ENSOANG00000002115 I
ENSOARG00000007598 Ovis aries ENSOARG00000007598 I
MSANTD3-TMEFF1 Oryctolagus cuniculus ENSOCUG00000006373 I
MSANTD3 Otolemur garnettii ENSOGAG00000024703 I
ENSP00000364022 Macaca fascicularis ENSP00000364022 I
MSANTD3 Pan troglodytes ENSPTRG00000038720 I
Msantd3 Rattus norvegicus ENSRNOG00000008159 I
ENSSHAG00000009700 Sarcophilus harrisii ENSSHAG00000009700 I
ENSSSCG00000005390 Sus scrofa ENSSSCG00000005390 I
ENSSTOG00000026763 Ictidomys tridecemlineatus ENSSTOG00000026763 I
MSANTD3 Taeniopygia guttata ENSTGUG00000008752 I
Gfo_R006190 Geospiza fortis Gfo_R006190 I
Ogr12786 Ophisaurus gracilis Ogr12786 I
Pvit_18499 Pogona vitticeps Pvit_18499 I
Tal_R010083 Tyto alba Tal_R010083 I
msantd3 Xenopus tropicalis XB-GENE-5737820 I
msantd3.L Xenopus laevis XB-GENE-5737853 I