CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CDX4 *(Echinops telfairi)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSETEG00000018862	T209437_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Cdx4 M09197_2.00	Mus musculus	WGATTTATDRBH	DVYHATAAATCW	Misc Kulakovskiy et al.(2013) CDX4_MOUSE.H11MO.0.A	0.754	0.893
CDX4 M05129_2.00	Homo sapiens	VKTTTATKRCH	DGYMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_HT-SELEX	0.754	0.875
CDX4 M05130_2.00	Homo sapiens	BGTCGTAAAHN	NDTTTACGACV	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_1	0.754	0.875
CDX4 M05131_2.00	Homo sapiens	VKTTTATKGCN	NGCMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_2	0.754	0.875
Cdx1 M00427_2.00	Mus musculus	NWWATDRNN	NNYHATWWN	PBM Berger et al.(2008) Cdx1_2245	0.718	0.804
CDX1 M03115_2.00	Homo sapiens	NTTTATKRB	VYMATAAAN	SELEX Jolma et al.(2013) CDX1_1	0.718	0.804
CDX1 M05018_2.00	Homo sapiens	VKTTTATKRCN	NGYMATAAAMB	SELEX Yin et al.(2017) CDX1_eDBD_HT-SELEX	0.718	0.804
CDX1 M09140_2.00	Homo sapiens	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_HUMAN.H11MO.0.C	0.718	0.804
Cdx1 M09186_2.00	Mus musculus	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_MOUSE.H11MO.0.C	0.718	0.804
CDX1 M10670_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q4	0.718	0.804
CDX1 M10671_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q5	0.718	0.804
CDX1 M05019_2.00	Homo sapiens	NGTCGTAAAWB	VWTTTACGACN	SELEX Yin et al.(2017) CDX1_eDBD_Methyl-HT-SELEX	0.718	0.804
Cdx2 M00447_2.00	Mus musculus	NWWAYDRNN	NNYHRTWWN	PBM Berger et al.(2008) Cdx2_4272	0.706	0.804
Cdx2 M09193_2.00	Mus musculus	BTTTATKRCYBY	RVRGYMATAAAV	Misc Kulakovskiy et al.(2013) CDX2_MOUSE.H11MO.0.A	0.706	0.804
Cdx2 M09572_2.00	Mus musculus	NTTTTATKRC	GYMATAAAAN	Misc Heinz et al.(2010) mES-Cdx2_GSE14586	0.706	0.804
CDX2 M03196_2.00	Homo sapiens	KTTTATKRB	VYMATAAAM	SELEX Jolma et al.(2013) CDX2_1	0.706	0.786
CDX2 M05248_2.00	Homo sapiens	NDTWAYRRYN	NRYYRTWAHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_1	0.706	0.786
CDX2 M05249_2.00	Homo sapiens	NDWWATKRB	VYMATWWHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_2	0.706	0.786
CDX2 M08131_2.00	Homo sapiens	YTTTATKRCHB	VDGYMATAAAR	ChIP-seq Mathelier et al.(2014) MA0465.1	0.706	0.786
CDX2 M09152_2.00	Homo sapiens	DTTBATKGCHNB	VNDGCMATVAAH	Misc Kulakovskiy et al.(2013) CDX2_HUMAN.H11MO.0.A	0.706	0.786
CDX2 M10723_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_01	0.706	0.786
CDX2 M10724_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_02	0.706	0.786
CDX2 M10725_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5	0.706	0.786
CDX2 M10726_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q6	0.706	0.786
CDX2 M05250_2.00	Homo sapiens	NRTCGTAWHBNN	NNVDWTACGAYN	SELEX Yin et al.(2017) CDX2_eDBD_Methyl-HT-SELEX	0.706	0.786
CDX1 M10761_2.00	Gallus gallus	BDBWAAK	MTTWVHV	Transfac Matys et al.(2006) V$CDXA_01	0.706	0.768
CDX1 M10762_2.00	Gallus gallus	WWWWMYR	YRKWAWW	Transfac Matys et al.(2006) V$CDXA_02	0.706	0.768
cad M03780_2.00	Drosophila melanogaster	NKTTTATKRCHB	VDGYMATAAAMN	SELEX Nitta et al.(2015) cad_1	0.696	0.750
cad M03781_2.00	Drosophila melanogaster	NDTTTATKRCHN	NDGYMATAAAHN	SELEX Nitta et al.(2015) cad_2	0.696	0.750
cad M03782_2.00	Drosophila melanogaster	NDTTTATKRCNB	VNGYMATAAAHN	SELEX Nitta et al.(2015) cad_3	0.696	0.750
cad M03783_2.00	Drosophila melanogaster	NNTTTAYGRYNN	NNRYCRTAAANN	SELEX Nitta et al.(2015) cad_4	0.696	0.750
cad M06223_2.00	Drosophila melanogaster	HTTWATTR	YAATWAAD	B1H Zhu et al.(2011) Cad_Cell_FBgn0000251	0.696	0.750
cad M06224_2.00	Drosophila melanogaster	RBYVDAAMV	BKTTHBRVY	B1H Zhu et al.(2011) cad_FlyReg_FBgn0000251	0.696	0.750
cad M06225_2.00	Drosophila melanogaster	NTTWATKR	YMATWAAN	B1H Zhu et al.(2011) Cad_SOLEXA_FBgn0000251	0.696	0.750
cad M08420_2.00	Drosophila melanogaster	DTTTTATKRYY	RRYMATAAAAH	ChIP-chip Mathelier et al.(2014) MA0216.2	0.696	0.750
cad M09580_2.00	Drosophila melanogaster	DTTTAYGRYN	NRYCRTAAAH	Misc Heinz et al.(2010) Drosophila-Embryos_modEncode	0.696	0.750
cad M09674_2.00	Drosophila melanogaster	HTTTATKRBY	RVYMATAAAD	Misc Kulakovskiy et al.(2009) cad	0.696	0.750
cad M10783_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$CAD_Q6	0.696	0.750
Q70LF3_ARTSF M02211_2.00	Artemia franciscana	BTAATTAB	VTAATTAV	PBM Weirauch et al.(2014) pTH5553	0.686	0.786
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSETEP00000015324	Homeodomain	171	226	EKHRVVYTDLQRLELEKEFHCNRYTTIRRKSKLAVNLGLSERQVKIFQNRSARERK

Links
Other Homeodomain family TFs
Other *Echinops telfairi* TFs

256 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL011359	Aedes aegypti	AAEL011359	N	0.000
AALB003318	Anopheles albimanus	AALB003318	N	0.000
AARA010518	Anopheles arabiensis	AARA010518	N	0.000
AATE012701	Anopheles atroparvus	AATE012701	N	0.000
ACEP10864	Atta cephalotes	ACEP10864	N	0.000
ACOM037786	Anopheles coluzzii	ACOM037786	N	0.000
ACUA009064	Anopheles culicifacies	ACUA009064	N	0.000
ACUA021284	Anopheles culicifacies	ACUA021284	N	0.000
ADAC003441	Anopheles darlingi	ADAC003441	N	0.000
ADIR001048	Anopheles dirus	ADIR001048	N	0.000
AEPI002999	Anopheles epiroticus	AEPI002999	N	0.000
AFAF003258	Anopheles farauti	AFAF003258	N	0.000
AGAP013287	Anopheles gambiae	AGAP013287	N	0.000
AMAM002295	Anopheles maculatus	AMAM002295	N	0.000
AMEC007532	Anopheles melas	AMEC007532	N	0.000
AMEM000708	Anopheles merus	AMEM000708	N	0.000
AMIN005282	Anopheles minimus	AMIN005282	N	0.000
AQUA008196	Anopheles quadriannulatus	AQUA008196	N	0.000
ASIS002506	Anopheles sinensis	ASIS002506	N	0.000
ASTEI10578	Anopheles stephensi	ASTEI10578	N	0.000
CPIJ019088	Culex quinquefasciatus	CPIJ019088	N	0.000
CpipJ_CPIJ019088	Culex pipiens	CpipJ_CPIJ019088	N	0.000
NFAT	Drosophila melanogaster	FBgn0030505	N	0.000
GA10815	Drosophila pseudoobscura	FBgn0070871	N	0.000
GF21808	Drosophila ananassae	FBgn0098808	N	0.000
GG17798	Drosophila erecta	FBgn0110020	N	0.000
GH12805	Drosophila grimshawi	FBgn0120284	N	0.000
GI15077	Drosophila mojavensis	FBgn0137827	N	0.000
GL22604	Drosophila persimilis	FBgn0160195	N	0.000
GM17623	Drosophila sechellia	FBgn0172531	N	0.000
GJ18884	Drosophila virilis	FBgn0206030	N	0.000
GK24938	Drosophila willistoni	FBgn0226897	N	0.000
GE17094	Drosophila yakuba	FBgn0234577	N	0.000
GB45138	Apis mellifera	GB45138	N	0.000
HHAL007230-PA	Halyomorpha halys	HHAL007230-PA	N	0.000
L798_07911	Zootermopsis nevadensis	L798_07911	N	0.000
LDEC006285	Leptinotarsa decemlineata	LDEC006285	N	0.000
NV18092	Nasonia vitripennis	NV18092	N	0.000
PHUM363570	Pediculus humanus	PHUM363570	N	0.000
TC014708	Tribolium castaneum	TC014708	N	0.000

CDX4 (Echinops telfairi) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

256 Related TFs

CDX4 **(Echinops telfairi)
Homeodomain**