ENSLACG00000018526 (Latimeria chalumnae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSLACG00000018526 T210943_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.867 0.981
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.867 0.981
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.867 0.981
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.867 0.981
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.867 0.981
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.827 0.792
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.827 0.792
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.827 0.792
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.827 0.792
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.827 0.792
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.826 0.774
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.826 0.774
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.826 0.774
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.826 0.774
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.708 0.736
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.708 0.736
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.708 0.736
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.708 0.736
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.708 0.736
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.708 0.736
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.708 0.736
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.708 0.736
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.708 0.736
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.708 0.736
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.708 0.736
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.708 0.736
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.708 0.736
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.708 0.736
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.708 0.736
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.708 0.736
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.708 0.736
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.708 0.736
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.708 0.717
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.708 0.717
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.708 0.717
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.708 0.717
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.708 0.717
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.708 0.717
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.708 0.717
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.708 0.717
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.634 0.604
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000021088 Homeodomain 186 238

Links

Other Homeodomain family TFs
Other Latimeria chalumnae TFs

542 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_045_00179 Aquilegia coerulea Aquca_045_00179 N
AT5G01305 Arabidopsis thaliana AT5G01305 N
BGIOSGA004736 Oryza indica BGIOSGA004736 N
Bo2g001330 Brassica oleracea Bo2g001330 N
Bostr.6251s0101 Boechera stricta Bostr.6251s0101 N
Bra028895 Brassica rapa Bra028895 N
BRADI2G54030 Brachypodium distachyon BRADI2G54030 N
Cagra.4082s0011 Capsella grandiflora Cagra.4082s0011 N
cassava41569.m1 Manihot esculenta cassava41569.m1 N
Ca_09396 Cicer arietinum Ca_09396 N
Cla018363 Citrullus lanatus Cla018363 N
Cucsa.130030 Cucumis sativus Cucsa.130030 N
evm.TU.supercontig_120.27 Carica papaya evm.TU.supercontig_120.27 N
APTX Arabidopsis lyrata fgenesh2_kg.6__80__AT5G01310.1 N
gene13480-v1.0-hybrid Fragaria vesca gene13480-v1.0-hybrid N
GLYMA01G30660 Glycine max GLYMA01G30660 N
GLYMA03G06792 Glycine max GLYMA03G06792 N
GLYMA0732S00200 Glycine max GLYMA0732S00200 N
GLYMA07G18651 Glycine max GLYMA07G18651 N
Gorai.012G117300 Gossypium raimondii Gorai.012G117300 N
GRMZM2G397518 Zea mays GRMZM2G397518 N
GSMUA_Achr4G18820_001 Musa acuminata GSMUA_Achr4G18820_001 N
LjSGA_012662.1 Lotus japonicus LjSGA_012662.1 N
LPERR01G31030 Leersia perrieri LPERR01G31030 N
Lus10002213.g Linum usitatissimum Lus10002213.g N
Lus10003386.g Linum usitatissimum Lus10003386.g N
MDP0000178778 Malus domestica MDP0000178778 N
MDP0000436338 Malus domestica MDP0000436338 N
mg005373m Mimulus guttatus mg005373m N
MLOC_54157 Hordeum vulgare MLOC_54157 N
MTR_7g069590 Medicago truncatula MTR_7g069590 N
OBART01G36050 Oryza barthii OBART01G36050 N
OGLUM01G39950 Oryza glumaepatula OGLUM01G39950 N
OMERI01G33130 Oryza meridionalis OMERI01G33130 N
ONIVA01G41030 Oryza nivara ONIVA01G41030 N
OPUNC01G34850 Oryza punctata OPUNC01G34850 N
ORGLA01G0299600 Oryza glaberrima ORGLA01G0299600 N
ORGLA06G0253200 Oryza glaberrima ORGLA06G0253200 N
ORUFI01G39410 Oryza rufipogon ORUFI01G39410 N
LAX Oryza sativa OS01G0831000 N
Pavir.Ea03297 Panicum virgatum Pavir.Ea03297 N
Pavir.J06869 Panicum virgatum Pavir.J06869 N
Pm002868 Prunus mume Pm002868 N
POPTR_0006s10350 Populus trichocarpa POPTR_0006s10350 N
POPTR_0016s12830 Populus trichocarpa POPTR_0016s12830 N
PRUPE_ppa025490mg Prunus persica PRUPE_ppa025490mg N
SapurV1A.0001s0420 Salix purpurea SapurV1A.0001s0420 N
SapurV1A.0905s0090 Salix purpurea SapurV1A.0905s0090 N
Si004520m.g Setaria italica Si004520m.g N
Solyc09g005070.1 Solanum lycopersicum Solyc09g005070.1 N
TCM_021641 Theobroma cacao TCM_021641 N
Thhalv10012562m.g Eutrema salsugineum Thhalv10012562m.g N
TRAES3BF030500010CFD_g Triticum aestivum TRAES3BF030500010CFD_g N
TRAES3BF030600030CFD_g Triticum aestivum TRAES3BF030600030CFD_g N
Traes_3B_D6EA106A51 Triticum aestivum Traes_3B_D6EA106A51 N
VIT_08s0058g00110 Vitis vinifera VIT_08s0058g00110 N