meis3 (Oryzias latipes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSORLG00000008534 T213903_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Meis3
M00488_2.00 		Mus musculus
NTGACANNN
NNNTGTCAN		 PBM
Berger et al.(2008)
Mrg2_2302 		0.865 0.982
Meis3
M03279_2.00 		Mus musculus
NTGACAN
NTGTCAN		 SELEX
Jolma et al.(2013)
Meis3_1 		0.865 0.982
Meis3
M03280_2.00 		Mus musculus
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
Meis3_2 		0.865 0.982
Meis1
M00407_2.00 		Mus musculus
NTGACADNN
NNHTGTCAN		 PBM
Berger et al.(2008)
Meis1_2335 		0.833 0.964
Meis2
M00437_2.00 		Mus musculus
NTGACANNN
NNNTGTCAN		 PBM
Berger et al.(2008)
Mrg1_2246 		0.833 0.964
MEIS1
M03165_2.00 		Homo sapiens
NTGACAN
NTGTCAN		 SELEX
Jolma et al.(2013)
MEIS1_1 		0.833 0.964
MEIS2
M03147_2.00 		Homo sapiens
WTGACAGSTGTCAM
KTGACASCTGTCAW		 SELEX
Jolma et al.(2013)
MEIS2_1 		0.833 0.964
MEIS2
M03148_2.00 		Homo sapiens
DTGACAGS
SCTGTCAH		 SELEX
Jolma et al.(2013)
MEIS2_2 		0.833 0.964
Meis2
M03261_2.00 		Mus musculus
NTGACAN
NTGTCAN		 SELEX
Jolma et al.(2013)
Meis2_1 		0.833 0.964
Meis2
M03262_2.00 		Mus musculus
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
Meis2_2 		0.833 0.964
MEIS2
M02740_2.00 		Homo sapiens
TGACASSTGTC
GACASSTGTCA		 SELEX
Jolma et al.(2010)
MEIS2_dimer 		0.833 0.964
MEIS2
M02741_2.00 		Homo sapiens
GGACAKNT
ANMTGTCC		 SELEX
Jolma et al.(2010)
MEIS2_monomer 		0.833 0.964
MEIS2
M05138_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
MEIS2_eDBD_HT-SELEX 		0.833 0.964
MEIS2
M05140_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
MEIS2_FL_HT-SELEX 		0.833 0.964
MEIS1
M09148_2.00 		Homo sapiens
NTGATTDATDDB
VHHATHAATCAN		 Misc
Kulakovskiy et al.(2013)
MEIS1_HUMAN.H11MO.0.A 		0.833 0.964
MEIS2
M09143_2.00 		Homo sapiens
HTGACAGBTKTBM
KVAMAVCTGTCAD		 Misc
Kulakovskiy et al.(2013)
MEIS2_HUMAN.H11MO.0.B 		0.833 0.964
Meis1
M09178_2.00 		Mus musculus
NTGATTDATDDB
VHHATHAATCAN		 Misc
Kulakovskiy et al.(2013)
MEIS1_MOUSE.H11MO.0.A 		0.833 0.964
Meis2
M09189_2.00 		Mus musculus
HTGACAGBTKTBM
KVAMAVCTGTCAD		 Misc
Kulakovskiy et al.(2013)
MEIS2_MOUSE.H11MO.0.B 		0.833 0.964
Meis1
M09568_2.00 		Mus musculus
VBTGWCASNN
NNSTGWCAVB		 Misc
Heinz et al.(2010)
MastCells-Meis1_GSE48085 		0.833 0.964
MEIS1
M10709_2.00 		Homo sapiens
NHNTGACAGNDN
NHNCTGTCANDN		 Transfac
Matys et al.(2006)
V$MEIS1_01 		0.833 0.964
MEIS1
M10710_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEIS1_06 		0.833 0.964
MEIS2
M05139_2.00 		Homo sapiens
YGACASSYGHCR
YGDCRSSTGTCR		 SELEX
Yin et al.(2017)
MEIS2_eDBD_Methyl-HT-SELEX 		0.833 0.964
MEIS2
M05141_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
MEIS2_FL_Methyl-HT-SELEX 		0.833 0.964
hth
M06490_2.00 		Drosophila melanogaster
TGACAK
MTGTCA		 B1H
Mathelier et al.(2014)
MA0227.1 		0.833 0.927
hth
M06252_2.00 		Drosophila melanogaster
TGTCA
TGACA		 B1H
Zhu et al.(2011)
Hth_Cell_FBgn0001235 		0.833 0.927
hth
M06253_2.00 		Drosophila melanogaster
NNTGACAD
HTGTCANN		 B1H
Zhu et al.(2011)
hth_SOLEXA_2_FBgn0001235 		0.833 0.927
hth
M06254_2.00 		Drosophila melanogaster
NTGACA
TGTCAN		 B1H
Zhu et al.(2011)
Hth_SOLEXA_FBgn0001235 		0.833 0.927
unc-62
M02185_2.00 		Caenorhabditis elegans
NHDAHANNN
NNNTDTHDN		 PBM
Weirauch et al.(2014)
pTH5781 		0.777 0.800
Pknox1
M00399_2.00 		Mus musculus
HGACRNNN
NNNYGTCD		 PBM
Berger et al.(2008)
Pknox1_2364 		0.749 0.709
Pknox2
M00468_2.00 		Mus musculus
NNNGACRNNN
NNNYGTCNNN		 PBM
Berger et al.(2008)
Pknox2_3077 		0.749 0.709
PKNOX1
M03178_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
PKNOX1_1 		0.749 0.709
PKNOX2
M03195_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
PKNOX2_1 		0.749 0.709
Pknox2
M03270_2.00 		Mus musculus
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
Pknox2_1 		0.749 0.709
PKNOX1
M05206_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
PKNOX1_eDBD_HT-SELEX 		0.749 0.709
PKNOX1
M05208_2.00 		Homo sapiens
TGACAGCTGTCA
TGACAGCTGTCA		 SELEX
Yin et al.(2017)
PKNOX1_FL_HT-SELEX 		0.749 0.709
PKNOX2
M05246_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
PKNOX2_eDBD_HT-SELEX 		0.749 0.709
PKNOX1
M09150_2.00 		Homo sapiens
TGABTGRCRGV
BCYGYCAVTCA		 Misc
Kulakovskiy et al.(2013)
PKNX1_HUMAN.H11MO.0.B 		0.749 0.709
Pknox1
M09175_2.00 		Mus musculus
TGABTGRCRGV
BCYGYCAVTCA		 Misc
Kulakovskiy et al.(2013)
PKNX1_MOUSE.H11MO.0.A 		0.749 0.709
PKNOX1
M10712_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PREP1_Q3 		0.749 0.709
PKNOX1
M05207_2.00 		Homo sapiens
YGWCASSTGWCR
YGWCASSTGWCR		 SELEX
Yin et al.(2017)
PKNOX1_eDBD_Methyl-HT-SELEX 		0.749 0.709
PKNOX1
M05209_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
PKNOX1_FL_Methyl-HT-SELEX 		0.749 0.709
PKNOX2
M05247_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
PKNOX2_eDBD_Methyl-HT-SELEX 		0.749 0.709
achi
M03860_2.00 		Drosophila melanogaster
TGACAD
HTGTCA		 SELEX
Nitta et al.(2015)
achi_1 		0.659 0.545
achi
M03861_2.00 		Drosophila melanogaster
TGACAGMTGTCA
TGACAKCTGTCA		 SELEX
Nitta et al.(2015)
achi_2 		0.659 0.545
achi
M03862_2.00 		Drosophila melanogaster
TGACAGNNNNNNYGTCA
TGACRNNNNNNCTGTCA		 SELEX
Nitta et al.(2015)
achi_3 		0.659 0.545
vis
M03859_2.00 		Drosophila melanogaster
TGACAS
STGTCA		 SELEX
Nitta et al.(2015)
vis_1 		0.659 0.545
vis
M06534_2.00 		Drosophila melanogaster
TGACAB
BTGTCA		 B1H
Mathelier et al.(2014)
MA0252.1 		0.659 0.545
achi
M06535_2.00 		Drosophila melanogaster
TGACAG
CTGTCA		 B1H
Mathelier et al.(2014)
MA0207.1 		0.659 0.545
achi
M06345_2.00 		Drosophila melanogaster
TGTCADW
WHTGACA		 B1H
Zhu et al.(2011)
Achi_Cell_FBgn0033749 		0.659 0.545
achi
M06346_2.00 		Drosophila melanogaster
HTGACA
TGTCAD		 B1H
Zhu et al.(2011)
Achi_SOLEXA_FBgn0033749 		0.659 0.545
vis
M06343_2.00 		Drosophila melanogaster
TGTCA
TGACA		 B1H
Zhu et al.(2011)
Vis_Cell_FBgn0033748 		0.659 0.545
vis
M06344_2.00 		Drosophila melanogaster
TGTCAD
HTGACA		 B1H
Zhu et al.(2011)
Vis_SOLEXA_FBgn0033748 		0.659 0.545
Tgif2
M00521_2.00 		Mus musculus
NNTGACANNN
NNNTGTCANN		 PBM
Berger et al.(2008)
Tgif2_3451 		0.658 0.527
TGIF2
M03123_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
TGIF2_1 		0.658 0.527
TGIF2
M05032_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
TGIF2_eDBD_HT-SELEX 		0.658 0.527
TGIF2
M05034_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Yin et al.(2017)
TGIF2_FL_HT-SELEX 		0.658 0.527
TGIF2
M05033_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
TGIF2_eDBD_Methyl-HT-SELEX 		0.658 0.527
TGIF2
M05035_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Yin et al.(2017)
TGIF2_FL_Methyl-HT-SELEX 		0.658 0.527
Tgif1
M00500_2.00 		Mus musculus
NNTGACANNN
NNNTGTCANN		 PBM
Berger et al.(2008)
Tgif1_2342 		0.626 0.545
TGIF1
M03223_2.00 		Homo sapiens
TGACAGCTGTCA
TGACAGCTGTCA		 SELEX
Jolma et al.(2013)
TGIF1_1 		0.626 0.545
TGIF1
M05317_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Yin et al.(2017)
TGIF1_eDBD_HT-SELEX 		0.626 0.545
TGIF1
M09159_2.00 		Homo sapiens
TGACAGS
SCTGTCA		 Misc
Kulakovskiy et al.(2013)
TGIF1_HUMAN.H11MO.0.A 		0.626 0.545
Tgif1
M09211_2.00 		Mus musculus
TGACAGBNV
BNVCTGTCA		 Misc
Kulakovskiy et al.(2013)
TGIF1_MOUSE.H11MO.0.A 		0.626 0.545
TGIF1
M10740_2.00 		Homo sapiens
WHNTGACARST
ASYTGTCANDW		 Transfac
Matys et al.(2006)
V$TGIF_01 		0.626 0.545
TGIF1
M05318_2.00 		Homo sapiens
TGACAKVTGTCA
TGACABMTGTCA		 SELEX
Yin et al.(2017)
TGIF1_eDBD_Methyl-HT-SELEX 		0.626 0.545
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000010718 Homeodomain 257 314

Links

Other Homeodomain family TFs
Other Oryzias latipes TFs

790 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000013231 Ailuropoda melanoleuca ENSAMEG00000013231 I
ZNF217 Bos taurus ENSBTAG00000030556 I
ZNF217 Canis familiaris ENSCAFG00000011813 I
ZNF217 Cavia porcellus ENSCPOG00000027399 I
ENSCSAG00000015287 Chlorocebus sabaeus ENSCSAG00000015287 I
ZNF217 Equus caballus ENSECAG00000011966 I
ZNF217 Felis catus ENSFCAG00000029845 I
ZNF217 Homo sapiens ENSG00000171940 D
ZNF217 Gorilla gorilla ENSGGOG00000022817 I
ZNF217 Loxodonta africana ENSLAFG00000017592 I
ENSMLUG00000003669 Myotis lucifugus ENSMLUG00000003669 I
ZNF217 Macaca mulatta ENSMMUG00000018358 I
ENSMPUG00000006142 Mustela putorius furo ENSMPUG00000006142 I
ENSNLEG00000007017 Nomascus leucogenys ENSNLEG00000007017 I
ZNF217 Ornithorhynchus anatinus ENSOANG00000003139 I
ZNF217 Otolemur garnettii ENSOGAG00000001685 I
ZNF217 Ochotona princeps ENSOPRG00000012813 I
ENSP00000304308-D1 Bos grunniens ENSP00000304308-D1 I
ENSP00000360526 Macaca fascicularis ENSP00000360526 I
ENSPANG00000020786 Papio anubis ENSPANG00000020786 I
ZNF217 Procavia capensis ENSPCAG00000003680 I
ENSPPYG00000011140 Pongo abelii ENSPPYG00000011140 I
ZNF217 Pan troglodytes ENSPTRG00000013636 I
ZNF217 Pteropus vampyrus ENSPVAG00000004133 I
ENSSHAG00000014362 Sarcophilus harrisii ENSSHAG00000014362 I
ZNF217 Sus scrofa ENSSSCG00000007484 I
ENSSTOG00000013807 Ictidomys tridecemlineatus ENSSTOG00000013807 I
ZNF217 Tupaia belangeri ENSTBEG00000015797 I
ZNF217 Tursiops truncatus ENSTTRG00000003806 I
Myotis_brandtii_ZNF217_10022279 Myotis brandtii Myotis_brandtii_ZNF217_10022279 I
Myotis_brandtii_ZNF217_10026334 Myotis brandtii Myotis_brandtii_ZNF217_10026334 I
Ogr09580 Ophisaurus gracilis Ogr09580 I
Pvit_03348 Pogona vitticeps Pvit_03348 I