CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSPFOG00000017886
(
Poecilia formosa
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSPFOG00000017886
T214533_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN
NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.805
0.930
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB
VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.805
0.930
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB
VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.805
0.930
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB
VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.805
0.930
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPFOP00000017997
Homeodomain
287
358
RGSRFTWRKECLAVMESYFSDNQYPDEAKREEIATACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKDIKR
Links
Other
Homeodomain
family TFs
Other
Poecilia formosa
TFs
95 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy