LHX1 (Taeniopygia guttata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTGUG00000008052 T216280_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.753 0.435
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.753 0.435
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.753 0.435
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.753 0.435
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.753 0.435
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.753 0.435
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.753 0.435
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.753 0.435
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.753 0.435
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.662 0.239
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.662 0.239
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.662 0.239
Lhx1
M00405_2.00 		Mus musculus
TRATDRNNN
NNNYHATYA		 PBM
Berger et al.(2008)
Lhx1_2240 		0.377 1.000
Lhx5
M00445_2.00 		Mus musculus
TAATKRNNN
NNNYMATTA		 PBM
Berger et al.(2008)
Lhx5_2279 		0.377 1.000
LHX1
M05410_2.00 		Homo sapiens
NTRATBRN
NYVATYAN		 SELEX
Yin et al.(2017)
LHX1_eDBD_HT-SELEX 		0.377 1.000
LHX5
M04936_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
LHX5_FL_HT-SELEX 		0.377 1.000
LHX1
M05411_2.00 		Homo sapiens
NHRAYGHN
NDCRTYDN		 SELEX
Yin et al.(2017)
LHX1_eDBD_Methyl-HT-SELEX 		0.377 1.000
LHX5
M04937_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_1 		0.377 1.000
LHX5
M04938_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_2 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000008292 Homeodomain 181 226

Links

Other Homeodomain family TFs
Other Taeniopygia guttata TFs

1327 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011750 Calypte anna Aan_R011750 N
Afo_R006263 Aptenodytes forsteri Afo_R006263 N
Alligator_sinensis_CCG011535.1 Alligator sinensis Alligator_sinensis_CCG011535.1 N
ENSAMEG00000012706 Ailuropoda melanoleuca ENSAMEG00000012706 N
ENSAPLG00000008722 Anas platyrhynchos ENSAPLG00000008722 N
AEBP2 Bos taurus ENSBTAG00000010818 N
AEBP2 Canis familiaris ENSCAFG00000012441 N
ENSCJAG00000001342 Callithrix jacchus ENSCJAG00000001342 N
AEBP2 Cavia porcellus ENSCPOG00000007440 N
ENSCSAG00000008085 Chlorocebus sabaeus ENSCSAG00000008085 N
AEBP2 Dasypus novemcinctus ENSDNOG00000014519 N
AEBP2 Equus caballus ENSECAG00000012977 N
ENSETEG00000006095 Echinops telfairi ENSETEG00000006095 N
ENSFALG00000001055 Ficedula albicollis ENSFALG00000001055 N
AEBP2 Felis catus ENSFCAG00000031640 N
AEBP2 Homo sapiens ENSG00000139154 N
ENSGALG00000013136 Gallus gallus ENSGALG00000013136 N
AEBP2 Gorilla gorilla ENSGGOG00000002023 N
ENSLACG00000010628 Latimeria chalumnae ENSLACG00000010628 N
AEBP2 Loxodonta africana ENSLAFG00000020685 N
ENSLOCG00000015421 Lepisosteus oculatus ENSLOCG00000015421 N
ENSMEUG00000010574 Macropus eugenii ENSMEUG00000010574 N
ENSMGAG00000013591 Meleagris gallopavo ENSMGAG00000013591 N
AEBP2 Myotis lucifugus ENSMLUG00000006293 N
AEBP2 Macaca mulatta ENSMMUG00000016243 N
ENSMODG00000017867 Monodelphis domestica ENSMODG00000017867 N
ENSMPUG00000011420 Mustela putorius furo ENSMPUG00000011420 N
Aebp2 Mus musculus ENSMUSG00000030232 N
ENSNLEG00000004553 Nomascus leucogenys ENSNLEG00000004553 N
ENSOARG00000020470 Ovis aries ENSOARG00000020470 N
ENSOCUG00000016677 Oryctolagus cuniculus ENSOCUG00000016677 N
AEBP2 Otolemur garnettii ENSOGAG00000017202 N
ENSP00000381840 Macaca fascicularis ENSP00000381840 N
ENSP00000381840-D1 Bos grunniens ENSP00000381840-D1 N
ENSPANG00000010276 Papio anubis ENSPANG00000010276 N
ENSPPYG00000004345 Pongo abelii ENSPPYG00000004345 N
ENSPSIG00000002184 Pelodiscus sinensis ENSPSIG00000002184 N
AEBP2 Pan troglodytes ENSPTRG00000004747 N
AEBP2 Pteropus vampyrus ENSPVAG00000008104 N
Aebp2 Rattus norvegicus ENSRNOG00000008929 N
ENSSARG00000010983 Sorex araneus ENSSARG00000010983 N
ENSSHAG00000018345 Sarcophilus harrisii ENSSHAG00000018345 N
AEBP2 Sus scrofa ENSSSCG00000000587 N
AEBP2 Taeniopygia guttata ENSTGUG00000012348 N
AEBP2 Tursiops truncatus ENSTTRG00000011776 N
ENSVPAG00000008562 Vicugna pacos ENSVPAG00000008562 N
Gfo_R002231 Geospiza fortis Gfo_R002231 N
Myotis_brandtii_PLEKHA5_10031422 Myotis brandtii Myotis_brandtii_PLEKHA5_10031422 N
Tal_R009212 Tyto alba Tal_R009212 N
aebp2.L Xenopus laevis XB-GENE-6251879 N