CDX2 (Taeniopygia guttata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTGUG00000011606 T216322_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Cdx1
M00427_2.00 		Mus musculus
NWWATDRNN
NNYHATWWN		 PBM
Berger et al.(2008)
Cdx1_2245 		0.867 0.947
CDX1
M03115_2.00 		Homo sapiens
NTTTATKRB
VYMATAAAN		 SELEX
Jolma et al.(2013)
CDX1_1 		0.867 0.947
CDX1
M05018_2.00 		Homo sapiens
VKTTTATKRCN
NGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX 		0.867 0.947
CDX1
M09140_2.00 		Homo sapiens
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C 		0.867 0.947
Cdx1
M09186_2.00 		Mus musculus
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C 		0.867 0.947
CDX1
M10670_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q4 		0.867 0.947
CDX1
M10671_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q5 		0.867 0.947
CDX1
M05019_2.00 		Homo sapiens
NGTCGTAAAWB
VWTTTACGACN		 SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX 		0.867 0.947
CDX2
M03196_2.00 		Homo sapiens
KTTTATKRB
VYMATAAAM		 SELEX
Jolma et al.(2013)
CDX2_1 		0.855 0.965
CDX2
M05248_2.00 		Homo sapiens
NDTWAYRRYN
NRYYRTWAHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1 		0.855 0.965
CDX2
M05249_2.00 		Homo sapiens
NDWWATKRB
VYMATWWHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2 		0.855 0.965
CDX2
M08131_2.00 		Homo sapiens
YTTTATKRCHB
VDGYMATAAAR		 ChIP-seq
Mathelier et al.(2014)
MA0465.1 		0.855 0.965
CDX2
M09152_2.00 		Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH		 Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A 		0.855 0.965
CDX2
M10723_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_01 		0.855 0.965
CDX2
M10724_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_02 		0.855 0.965
CDX2
M10725_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5 		0.855 0.965
CDX2
M10726_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q6 		0.855 0.965
CDX2
M05250_2.00 		Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN		 SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX 		0.855 0.965
CDX1
M10761_2.00 		Gallus gallus
BDBWAAK
MTTWVHV		 Transfac
Matys et al.(2006)
V$CDXA_01 		0.855 0.947
CDX1
M10762_2.00 		Gallus gallus
WWWWMYR
YRKWAWW		 Transfac
Matys et al.(2006)
V$CDXA_02 		0.855 0.947
Cdx2
M00447_2.00 		Mus musculus
NWWAYDRNN
NNYHRTWWN		 PBM
Berger et al.(2008)
Cdx2_4272 		0.850 0.930
Cdx2
M09193_2.00 		Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV		 Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A 		0.850 0.930
Cdx2
M09572_2.00 		Mus musculus
NTTTTATKRC
GYMATAAAAN		 Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586 		0.850 0.930
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.840 0.860
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.840 0.860
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.840 0.860
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.840 0.860
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.840 0.860
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.840 0.860
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.840 0.860
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.840 0.860
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.840 0.860
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.840 0.860
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.840 0.860
Q70LF3_ARTSF
M02211_2.00 		Artemia franciscana
BTAATTAB
VTAATTAV		 PBM
Weirauch et al.(2014)
pTH5553 		0.834 0.895
Cdx4
M09197_2.00 		Mus musculus
WGATTTATDRBH
DVYHATAAATCW		 Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A 		0.831 0.912
CDX4
M05129_2.00 		Homo sapiens
VKTTTATKRCH
DGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX 		0.831 0.895
CDX4
M05130_2.00 		Homo sapiens
BGTCGTAAAHN
NDTTTACGACV		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1 		0.831 0.895
CDX4
M05131_2.00 		Homo sapiens
VKTTTATKGCN
NGCMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2 		0.831 0.895
pal-1
M02183_2.00 		Caenorhabditis elegans
GYAATWAA
TTWATTRC		 PBM
Weirauch et al.(2014)
pTH6016 		0.650 0.684
Q9GP48_9TURB
M02217_2.00 		Discocelis tigrina
DTAATTAB
VTAATTAH		 PBM
Weirauch et al.(2014)
pTH6515 		0.641 0.702
Q24782_9CNID
M02206_2.00 		Eleutheria dichotoma
TTAATTAA
TTAATTAA		 PBM
Weirauch et al.(2014)
pTH5486 		0.613 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000011960 Homeodomain 176 232

Links

Other Homeodomain family TFs
Other Taeniopygia guttata TFs

318 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_00425 Capronia coronata A1O1_00425 N
A1O9_01477 Exophiala aquamarina A1O9_01477 N
ACRE_081730 Acremonium chrysogenum ACRE_081730 N
AOL_s00210g246 Arthrobotrys oligospora AOL_s00210g246 N
Bcin13g02910 Botrytis cinerea Bcin13g02910 N
BDDG_05783 Blastomyces dermatitidis BDDG_05783 N
BGHDH14_bgh00899 Blumeria graminis BGHDH14_bgh00899 N
ACLA_081950 Aspergillus clavatus CADACLAG00008081 N
ACLA_094500 Aspergillus clavatus CADACLAG00008494 N
CADAFLAG00003021 Aspergillus flavus CADAFLAG00003021 N
CADAFLAG00006464 Aspergillus flavus CADAFLAG00006464 N
AFUA_6G07780 Aspergillus fumigatus CADAFUAG00001723 N
CADANGAG00008607 Aspergillus niger CADANGAG00008607 N
ANIA_01924 Aspergillus nidulans CADANIAG00008584 N
NFIA_033490 Neosartorya fischeri CADNFIAG00003176 N
CCM_04463 Cordyceps militaris CCM_04463 N
CFIO01_03461 Colletotrichum fioriniae CFIO01_03461 N
CH063_13085 Colletotrichum higginsianum CH063_13085 N
CIMG_01270 Coccidioides immitis CIMG_01270 N
CMQ_3880 Grosmannia clavigera CMQ_3880 N
Cob_10938 Colletotrichum orbiculare Cob_10938 N
CPC735_051300 Coccidioides posadasii CPC735_051300 N
CTHT_0043160 Chaetomium thermophilum CTHT_0043160 N
DRE_04388 Drechslerella stenobrocha DRE_04388 N
EPUS_01750 Endocarpon pusillum EPUS_01750 N
estExt_fgenesh3_kg.C_60109 Neurospora discreta estExt_fgenesh3_kg.C_60109 N
estExt_Genewise1Plus.C_90296 Cryphonectria parasitica estExt_Genewise1Plus.C_90296 N
estExt_Genewise1Plus.C_sca_2_chr3_3_00374 Nectria haematococca estExt_Genewise1Plus.C_sca_2_chr3_3_00374 N
EURHEDRAFT_515456 Aspergillus ruber EURHEDRAFT_515456 N
EV44_g6401 Erysiphe necator EV44_g6401 N
F503_00791 Ophiostoma piceae uamh F503_00791 N
FFUJ_05884 Fusarium fujikuroi FFUJ_05884 N
fgenesh1_pm.00118_#_476 Aspergillus carbonarius fgenesh1_pm.00118_#_476 N
FGRRES_08393 Fusarium graminearum FGRRES_08393 N
FOXG_03428 Fusarium oxysporum FOXG_03428 N
FPSE_09009 Fusarium pseudograminearum FPSE_09009 N
FVEG_02301 Fusarium verticillioides FVEG_02301 N
G647_00495 Cladophialophora carrionii G647_00495 N
GGTG_07704 Gaeumannomyces graminis GGTG_07704 N
GMDG_02924 Pseudogymnoascus destructans GMDG_02924 N
GSTUM_00006959001 Tuber melanosporum GSTUM_00006959001 N
H072_4961 Dactylellina haptotyla H072_4961 N
H101_07776 Trichophyton interdigitale H101_07776 N
H102_07414 Trichophyton rubrum H102_07414 N
H105_07444 Trichophyton soudanense H105_07444 N
HCBG_03077 Histoplasma capsulatum HCBG_03077 N
MAPG_11122 Magnaporthe poae MAPG_11122 N
MBM_06382 Marssonina brunnea MBM_06382 N
MCYG_00496 Microsporum canis MCYG_00496 N
MCYG_00496 Arthroderma otae MCYG_00496 N
MGG_07205 Magnaporthe oryzae MGG_07205 N
MGYG_01467 Microsporum gypseum MGYG_01467 N
MYCTH_2307010 Myceliophthora thermophila MYCTH_2307010 N
NCU04830 Neurospora crassa NCU04830 N
NechaG67124 Fusarium solani NechaG67124 N
NEUTE1DRAFT_68581 Neurospora tetrasperma NEUTE1DRAFT_68581 N
OCS_00082 Ophiocordyceps sinensis OCS_00082 N
OIDMADRAFT_136366 Oidiodendron maius OIDMADRAFT_136366 N
OIDMADRAFT_180132 Oidiodendron maius OIDMADRAFT_180132 N
PAAG_08210 Paracoccidioides sp lutzii PAAG_08210 N
PABG_07429 Paracoccidioides brasiliensis PABG_07429 N
Pc13g00890 Penicillium chrysogenum Pc13g00890 N
Pc15g01300 Penicillium chrysogenum Pc15g01300 N
PCH_Pc12g09470 Penicillium rubens PCH_Pc12g09470 N
PCH_Pc13g00890 Penicillium rubens PCH_Pc13g00890 N
PCH_Pc15g01300 Penicillium rubens PCH_Pc15g01300 N
PDE_04621 Penicillium oxalicum PDE_04621 N
PDE_08869 Penicillium oxalicum PDE_08869 N
PITC_095770 Penicillium italicum PITC_095770 N
PMAA_030720 Talaromyces marneffei PMAA_030720 N
PMAA_030720 Penicillium marneffei PMAA_030720 N
PODANS_4_9520 Podospora anserina PODANS_4_9520 N
PV04_01613 Capronia semiimmersa PV04_01613 N
PV05_11393 Exophiala xenobiotica PV05_11393 N
PV06_03188 Exophiala oligosperma PV06_03188 N
PV06_11178 Exophiala oligosperma PV06_11178 N
PV07_10227 Cladophialophora immunda PV07_10227 N
PV08_05648 Exophiala spinifera PV08_05648 N
PV10_03312 Exophiala mesophila PV10_03312 N
PV11_07688 Exophiala sideris PV11_07688 N
PVAR5_3942 Byssochlamys spectabilis PVAR5_3942 N
PVAR5_6218 Byssochlamys spectabilis PVAR5_6218 N
S40285_02676 Stachybotrys chlorohalonata S40285_02676 N
S40288_06143 Stachybotrys chartarum S40288_06143 N
SBOR_7105 Sclerotinia borealis SBOR_7105 N
SMAC_03468 Sordaria macrospora SMAC_03468 N
SPBR_01466 Sporothrix brasiliensis SPBR_01466 N
SS1G_09554 Sclerotinia sclerotiorum SS1G_09554 N
TEQG_06860 Trichophyton equinum TEQG_06860 N
TESG_04226 Trichophyton tonsurans TESG_04226 N
TRIATDRAFT_131396 Trichoderma atroviride TRIATDRAFT_131396 N
TRIREDRAFT_3856 Trichoderma reesei TRIREDRAFT_3856 N
TRIVIDRAFT_36706 Trichoderma virens TRIVIDRAFT_36706 N
TRV_00538 Trichophyton verrucosum TRV_00538 N
TSTA_002440 Talaromyces stipitatus TSTA_002440 N
TSTA_067470 Talaromyces stipitatus TSTA_067470 N
U727_00433560211 Penicillium solitum U727_00433560211 N
UREG_01201 Uncinocarpus reesii UREG_01201 N
V499_02602 Pseudogymnoascus pannorum V499_02602 N
VDAG_07460 Verticillium dahliae VDAG_07460 N
VDBG_09306 Verticillium albo atrum VDBG_09306 N
VDBG_09306 Verticillium alfalfae VDBG_09306 N
VHEMI06722 Torrubiella hemipterigena VHEMI06722 N