ENSTNIG00000000021 (Tetraodon nigroviridis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTNIG00000000021 T216358_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CDX2
M03196_2.00 		Homo sapiens
KTTTATKRB
VYMATAAAM		 SELEX
Jolma et al.(2013)
CDX2_1 		0.838 0.842
CDX2
M05248_2.00 		Homo sapiens
NDTWAYRRYN
NRYYRTWAHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1 		0.838 0.842
CDX2
M05249_2.00 		Homo sapiens
NDWWATKRB
VYMATWWHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2 		0.838 0.842
CDX2
M08131_2.00 		Homo sapiens
YTTTATKRCHB
VDGYMATAAAR		 ChIP-seq
Mathelier et al.(2014)
MA0465.1 		0.838 0.842
CDX2
M09152_2.00 		Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH		 Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A 		0.838 0.842
CDX2
M10723_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_01 		0.838 0.842
CDX2
M10724_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_02 		0.838 0.842
CDX2
M10725_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5 		0.838 0.842
CDX2
M10726_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q6 		0.838 0.842
CDX2
M05250_2.00 		Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN		 SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX 		0.838 0.842
Cdx2
M00447_2.00 		Mus musculus
NWWAYDRNN
NNYHRTWWN		 PBM
Berger et al.(2008)
Cdx2_4272 		0.838 0.825
Cdx2
M09193_2.00 		Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV		 Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A 		0.838 0.825
Cdx2
M09572_2.00 		Mus musculus
NTTTTATKRC
GYMATAAAAN		 Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586 		0.838 0.825
CDX1
M10761_2.00 		Gallus gallus
BDBWAAK
MTTWVHV		 Transfac
Matys et al.(2006)
V$CDXA_01 		0.838 0.825
CDX1
M10762_2.00 		Gallus gallus
WWWWMYR
YRKWAWW		 Transfac
Matys et al.(2006)
V$CDXA_02 		0.838 0.825
Cdx1
M00427_2.00 		Mus musculus
NWWATDRNN
NNYHATWWN		 PBM
Berger et al.(2008)
Cdx1_2245 		0.838 0.807
CDX1
M03115_2.00 		Homo sapiens
NTTTATKRB
VYMATAAAN		 SELEX
Jolma et al.(2013)
CDX1_1 		0.838 0.807
CDX1
M05018_2.00 		Homo sapiens
VKTTTATKRCN
NGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX 		0.838 0.807
CDX1
M09140_2.00 		Homo sapiens
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C 		0.838 0.807
Cdx1
M09186_2.00 		Mus musculus
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C 		0.838 0.807
CDX1
M10670_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q4 		0.838 0.807
CDX1
M10671_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q5 		0.838 0.807
CDX1
M05019_2.00 		Homo sapiens
NGTCGTAAAWB
VWTTTACGACN		 SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX 		0.838 0.807
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.828 0.789
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.828 0.789
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.828 0.789
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.828 0.789
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.828 0.789
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.828 0.789
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.828 0.789
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.828 0.789
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.828 0.789
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.828 0.789
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.828 0.789
Q70LF3_ARTSF
M02211_2.00 		Artemia franciscana
BTAATTAB
VTAATTAV		 PBM
Weirauch et al.(2014)
pTH5553 		0.817 0.807
Cdx4
M09197_2.00 		Mus musculus
WGATTTATDRBH
DVYHATAAATCW		 Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A 		0.807 0.825
CDX4
M05129_2.00 		Homo sapiens
VKTTTATKRCH
DGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX 		0.807 0.807
CDX4
M05130_2.00 		Homo sapiens
BGTCGTAAAHN
NDTTTACGACV		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1 		0.807 0.807
CDX4
M05131_2.00 		Homo sapiens
VKTTTATKGCN
NGCMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2 		0.807 0.807
pal-1
M02183_2.00 		Caenorhabditis elegans
GYAATWAA
TTWATTRC		 PBM
Weirauch et al.(2014)
pTH6016 		0.650 0.684
Q9GP48_9TURB
M02217_2.00 		Discocelis tigrina
DTAATTAB
VTAATTAH		 PBM
Weirauch et al.(2014)
pTH6515 		0.639 0.667
Q24782_9CNID
M02206_2.00 		Eleutheria dichotoma
TTAATTAA
TTAATTAA		 PBM
Weirauch et al.(2014)
pTH5486 		0.606 0.544
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000002359 Homeodomain 14 70

Links

Other Homeodomain family TFs
Other Tetraodon nigroviridis TFs

326 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011585 Calypte anna Aan_R011585 I 0.000
Afo_R007908 Aptenodytes forsteri Afo_R007908 I 0.000
Alligator_sinensis_CCG008027.1 Alligator sinensis Alligator_sinensis_CCG008027.1 I 0.000
Brh_R009272 Buceros rhinoceros Brh_R009272 I 0.000
Cmyd_10007723 Chelonia mydas Cmyd_10007723 I 0.000
MAFF Anolis carolinensis ENSACAG00000008424 I 0.000
ENSAMEG00000010499 Ailuropoda melanoleuca ENSAMEG00000010499 I 0.000
ENSAMXG00000008651 Astyanax mexicanus ENSAMXG00000008651 I 0.000
MAFF Bos taurus ENSBTAG00000021435 I 0.000
ENSBTAP00000028574-D1 Bos grunniens ENSBTAP00000028574-D1 I 0.000
MAFF Canis familiaris ENSCAFG00000029842 I 0.000
MAFF Callithrix jacchus ENSCJAG00000011992 I 0.000
ENSCSAG00000006757 Chlorocebus sabaeus ENSCSAG00000006757 I 0.000
maff Danio rerio ENSDARG00000028957 I 0.000
Maff Dipodomys ordii ENSDORG00000013449 I 0.000
MAFF Echinops telfairi ENSETEG00000012984 I 0.000
ENSFALG00000012611 Ficedula albicollis ENSFALG00000012611 I 0.000
MAFF Homo sapiens ENSG00000185022 D 0.000
mafgb Gasterosteus aculeatus ENSGACG00000019041 I 0.000
ENSGALG00000012277 Gallus gallus ENSGALG00000012277 I 0.000
MAFF Gorilla gorilla ENSGGOG00000021932 I 0.000
ENSLACG00000007109 Latimeria chalumnae ENSLACG00000007109 I 0.000
MAFF Loxodonta africana ENSLAFG00000022547 I 0.000
ENSMEUG00000002984 Macropus eugenii ENSMEUG00000002984 I 0.000
MAFF Meleagris gallopavo ENSMGAG00000015937 I 0.000
ENSMICG00000011572 Microcebus murinus ENSMICG00000011572 I 0.000
MAFF Myotis lucifugus ENSMLUG00000011358 I 0.000
ENSMMUP00000018288 Macaca fascicularis ENSMMUP00000018288 I 0.000
MAFF Monodelphis domestica ENSMODG00000018732 I 0.000
ENSMPUG00000013085 Mustela putorius furo ENSMPUG00000013085 I 0.000
Maff Mus musculus ENSMUSG00000042622 D 0.000
ENSNLEG00000015068 Nomascus leucogenys ENSNLEG00000015068 I 0.000
ENSOARG00000015236 Ovis aries ENSOARG00000015236 I 0.000
MAFF Oryctolagus cuniculus ENSOCUG00000006266 I 0.000
MAFF Otolemur garnettii ENSOGAG00000027848 I 0.000
ENSONIG00000001329 Oreochromis niloticus ENSONIG00000001329 I 0.000
ENSONIG00000019674 Oreochromis niloticus ENSONIG00000019674 I 0.000
mafk Oryzias latipes ENSORLG00000004687 I 0.000
MAFG Oryzias latipes ENSORLG00000012170 I 0.000
ENSPANG00000020550 Papio anubis ENSPANG00000020550 I 0.000
MAFF Procavia capensis ENSPCAG00000013370 I 0.000
ENSPFOG00000002983 Poecilia formosa ENSPFOG00000002983 I 0.000
ENSPFOG00000005759 Poecilia formosa ENSPFOG00000005759 I 0.000
ENSPFOG00000012736 Poecilia formosa ENSPFOG00000012736 I 0.000
ENSPPYG00000011816 Pongo abelii ENSPPYG00000011816 I 0.000
MAFF Pan troglodytes ENSPTRG00000029431 I 0.000
MAFK Pteropus vampyrus ENSPVAG00000013872 I 0.000
Maff Rattus norvegicus ENSRNOG00000012886 I 0.000
MAFF Sus scrofa ENSSSCG00000030165 I 0.000
ENSSTOG00000025460 Ictidomys tridecemlineatus ENSSTOG00000025460 I 0.000
MAFF Taeniopygia guttata ENSTGUG00000010431 I 0.000
maff Tetraodon nigroviridis ENSTNIG00000001100 I 0.000
mafk Tetraodon nigroviridis ENSTNIG00000004471 I 0.000
mafk Takifugu rubripes ENSTRUG00000013716 I 0.000
maff Takifugu rubripes ENSTRUG00000016981 I 0.000
MAFF Tursiops truncatus ENSTTRG00000005618 I 0.000
ENSXMAG00000009331 Xiphophorus maculatus ENSXMAG00000009331 I 0.000
ENSXMAG00000012964 Xiphophorus maculatus ENSXMAG00000012964 I 0.000
Gfo_R004700 Geospiza fortis Gfo_R004700 I 0.000
Ogr11652 Ophisaurus gracilis Ogr11652 I 0.000
Pvit_08359 Pogona vitticeps Pvit_08359 I 0.000