nkx6.1 (Tetraodon nigroviridis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTNIG00000009010 T216468_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nkx6-1
M00466_2.00 		Mus musculus
NDTDATNRN
NYNATHAHN		 PBM
Berger et al.(2008)
Nkx6-1_2825 		0.867 1.000
NKX6-1
M09151_2.00 		Homo sapiens
RAHWRATKDSNWWWTRATD
HATYAWWWNSHMATYWDTY		 Misc
Kulakovskiy et al.(2013)
NKX61_HUMAN.H11MO.0.B 		0.867 1.000
Nkx6-1
M09200_2.00 		Mus musculus
HNWRATKDNHWWWTRATDR
YHATYAWWWDNHMATYWND		 Misc
Kulakovskiy et al.(2013)
NKX61_MOUSE.H11MO.0.A 		0.867 1.000
Nkx6-1
M09573_2.00 		Mus musculus
NDTAATKR
YMATTAHN		 Misc
Heinz et al.(2010)
Islet-Nkx6.1_GSE40975 		0.867 1.000
NKX6-1
M10718_2.00 		Homo sapiens
HWTTTAATKGRWT
AWYCMATTAAAWD		 Transfac
Matys et al.(2006)
V$NKX61_01 		0.867 1.000
NKX6-1
M10719_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX61_08 		0.867 1.000
Nkx6-3
M00522_2.00 		Mus musculus
NDYDATNRN
NYNATHRHN		 PBM
Berger et al.(2008)
Nkx6-3_3446 		0.867 0.965
NKX6-3
M05242_2.00 		Homo sapiens
NWTAATGRB
VYCATTAWN		 SELEX
Yin et al.(2017)
NKX6-3_eDBD_HT-SELEX 		0.867 0.965
NKX6-3
M05243_2.00 		Homo sapiens
DWTAATGRB
VYCATTAWH		 SELEX
Yin et al.(2017)
NKX6-3_eDBD_Methyl-HT-SELEX 		0.867 0.965
NKX6-2
M05184_2.00 		Homo sapiens
DTAATTRN
NYAATTAH		 SELEX
Yin et al.(2017)
NKX6-2_eDBD_HT-SELEX 		0.858 0.982
NKX6-2
M05186_2.00 		Homo sapiens
WTAATKAB
VTMATTAW		 SELEX
Yin et al.(2017)
NKX6-2_FL_HT-SELEX 		0.858 0.982
NKX6-2
M10711_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX62_Q2 		0.858 0.982
NKX6-2
M05185_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
NKX6-2_eDBD_Methyl-HT-SELEX 		0.858 0.982
NKX6-2
M05187_2.00 		Homo sapiens
WTAATKAB
VTMATTAW		 SELEX
Yin et al.(2017)
NKX6-2_FL_Methyl-HT-SELEX 		0.858 0.982
HGTX
M03869_2.00 		Drosophila melanogaster
DTAATKRN
NYMATTAH		 SELEX
Nitta et al.(2015)
HGTX_1 		0.855 0.947
HGTX
M03870_2.00 		Drosophila melanogaster
DTAATKRN
NYMATTAH		 SELEX
Nitta et al.(2015)
HGTX_2 		0.855 0.947
HGTX
M06542_2.00 		Drosophila melanogaster
DTAATKA
TMATTAH		 B1H
Mathelier et al.(2014)
MA0191.1 		0.855 0.947
HGTX
M06360_2.00 		Drosophila melanogaster
DDTAATKA
TMATTAHH		 B1H
Zhu et al.(2011)
Hgtx_Cell_FBgn0040318 		0.855 0.947
HGTX
M06361_2.00 		Drosophila melanogaster
NWTAATKA
TMATTAWN		 B1H
Zhu et al.(2011)
Hgtx_SOLEXA_FBgn0040318 		0.855 0.947
CBG20882
M01244_2.00 		Caenorhabditis briggsae
NDHDATDRN
NYHATHDHN		 PBM
Lambert et al.(2019)
pTH11477 		0.811 0.737
Q0N4H9_NEMVE
M02165_2.00 		Nematostella vectensis
NNYRWWNNN
NNNWWYRNN		 PBM
Weirauch et al.(2014)
pTH6101 		0.685 0.579
NEMVEDRAFT_v1g129868
M02146_2.00 		Nematostella vectensis
NYRAWNDNN
NNHNWTYRN		 PBM
Weirauch et al.(2014)
pTH5749 		0.679 0.579
NK7.1
M03847_2.00 		Drosophila melanogaster
VTTAAAYGDTD
HAHCRTTTAAB		 SELEX
Nitta et al.(2015)
NK7.1_1 		0.617 0.614
NK7.1
M03848_2.00 		Drosophila melanogaster
NSTTAATTGVY
RBCAATTAASN		 SELEX
Nitta et al.(2015)
NK7.1_2 		0.617 0.614
NK7.1
M06524_2.00 		Drosophila melanogaster
TTAATDR
YHATTAA		 B1H
Mathelier et al.(2014)
MA0196.1 		0.617 0.614
NK7.1
M06323_2.00 		Drosophila melanogaster
NTTAATDR
YHATTAAN		 B1H
Zhu et al.(2011)
NK7.1_Cell_FBgn0024321 		0.617 0.614
NK7.1
M06324_2.00 		Drosophila melanogaster
YTAATDR
YHATTAR		 B1H
Zhu et al.(2011)
NK7.1_SOLEXA_FBgn0024321 		0.617 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000011865 Homeodomain 178 234

Links

Other Homeodomain family TFs
Other Tetraodon nigroviridis TFs

311 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_004430 Acremonium chrysogenum ACRE_004430 I 0.000
Bcin06g06480 Botrytis cinerea Bcin06g06480 I 0.000
CGGC5_14308 Colletotrichum gloeosporioides CGGC5_14308 I 0.000
CH063_05452 Colletotrichum higginsianum CH063_05452 I 0.000
CMQ_3175 Grosmannia clavigera CMQ_3175 I 0.000
CSUB01_02000 Colletotrichum sublineola CSUB01_02000 I 0.000
estExt_Genewise1.C_120208 Neurospora discreta estExt_Genewise1.C_120208 I 0.000
F503_02949 Ophiostoma piceae uamh F503_02949 I 0.000
FFUJ_04435 Fusarium fujikuroi FFUJ_04435 I 0.000
FFUJ_09085 Fusarium fujikuroi FFUJ_09085 I 0.000
FGRRES_17152 Fusarium graminearum FGRRES_17152 D 0.000
FGRRES_17238 Fusarium graminearum FGRRES_17238 D 0.000
FVEG_04119 Fusarium verticillioides FVEG_04119 I 0.000
FVEG_06579 Fusarium verticillioides FVEG_06579 I 0.000
GGTG_02769 Gaeumannomyces graminis GGTG_02769 I 0.000
GLRG_08361 Colletotrichum graminicola GLRG_08361 I 0.000
HMPREF1624_05953 Sporothrix schenckii HMPREF1624_05953 I 0.000
MAPG_01731 Magnaporthe poae MAPG_01731 I 0.000
SMAC_01743 Sordaria macrospora SMAC_01743 I 0.000
SPBR_00057 Sporothrix brasiliensis SPBR_00057 I 0.000
SS1G_03098 Sclerotinia sclerotiorum SS1G_03098 I 0.000
UV8b_5932 Ustilaginoidea virens UV8b_5932 I 0.000
VDAG_00465 Verticillium dahliae VDAG_00465 I 0.000
VDAG_07897 Verticillium dahliae VDAG_07897 I 0.000
VDBG_00856 Verticillium alfalfae VDBG_00856 I 0.000
VDBG_00856 Verticillium albo atrum VDBG_00856 I 0.000
VHEMI03354 Torrubiella hemipterigena VHEMI03354 I 0.000