six6a (Tetraodon nigroviridis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTNIG00000017347 T216573_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.867 1.000
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.867 1.000
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.867 1.000
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.867 1.000
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000020485 Homeodomain 133 189

Links

Other Homeodomain family TFs
Other Tetraodon nigroviridis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA030113 Oryza indica BGIOSGA030113 I
BGIOSGA034613 Oryza indica BGIOSGA034613 N
BGIOSGA036756 Oryza indica BGIOSGA036756 N
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I
Carubv10012720m.g Capsella rubella Carubv10012720m.g I
Carubv10021420m.g Capsella rubella Carubv10021420m.g I
Carubv10022162m.g Capsella rubella Carubv10022162m.g I
F775_02479 Aegilops tauschii F775_02479 N
F775_25840 Aegilops tauschii F775_25840 I
GRMZM2G169564 Zea mays GRMZM2G169564 N
GRMZM2G441031 Zea mays GRMZM2G441031 I
GSMUA_Achr5G08580_001 Musa acuminata GSMUA_Achr5G08580_001 I
LPERR11G00960 Leersia perrieri LPERR11G00960 I
LPERR11G00970 Leersia perrieri LPERR11G00970 N
LPERR12G01070 Leersia perrieri LPERR12G01070 I
LPERR12G01080 Leersia perrieri LPERR12G01080 N
MLOC_71897 Hordeum vulgare MLOC_71897 I
OB05G17240 Oryza brachyantha OB05G17240 I
OB11G10760 Oryza brachyantha OB11G10760 N
OB12G11030 Oryza brachyantha OB12G11030 N
OBART11G01100 Oryza barthii OBART11G01100 N
OBART12G00840 Oryza barthii OBART12G00840 N
OBART12G00850 Oryza barthii OBART12G00850 N
OGLUM11G00850 Oryza glumaepatula OGLUM11G00850 I
OGLUM12G01400 Oryza glumaepatula OGLUM12G01400 N
OLONG_002978 Oryza longistaminata OLONG_002978 I
OMERI11G01520 Oryza meridionalis OMERI11G01520 N
OMERI11G01570 Oryza meridionalis OMERI11G01570 N
ONIVA09G03360 Oryza nivara ONIVA09G03360 I
ONIVA11G01050 Oryza nivara ONIVA11G01050 N
ONIVA11G01230 Oryza nivara ONIVA11G01230 N
OPUNC11G00970 Oryza punctata OPUNC11G00970 N
OPUNC11G00980 Oryza punctata OPUNC11G00980 N
OPUNC12G00970 Oryza punctata OPUNC12G00970 N
OPUNC12G00990 Oryza punctata OPUNC12G00990 N
ORGLA09G0026100 Oryza glaberrima ORGLA09G0026100 I
ORGLA11G0201900 Oryza glaberrima ORGLA11G0201900 N
ORGLA12G0007500 Oryza glaberrima ORGLA12G0007500 N
ORGLA12G0007600 Oryza glaberrima ORGLA12G0007600 N
OS11G0117400 Oryza sativa OS11G0117400 N
OS11G0117500 Oryza sativa OS11G0117500 N
OS12G0116600 Oryza sativa OS12G0116600 N
OS12G0116700 Oryza sativa OS12G0116700 N
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I
Pavir.J34713 Panicum virgatum Pavir.J34713 N
Pavir.J39511 Panicum virgatum Pavir.J39511 I
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I
Sb05g001180 Sorghum bicolor Sb05g001180 N
Sb08g002570 Sorghum bicolor Sb08g002570 N
Si010764m.g Setaria italica Si010764m.g N
Si010832m.g Setaria italica Si010832m.g N
Si019098m.g Setaria italica Si019098m.g N
Si027360m.g Setaria italica Si027360m.g N
Si028202m.g Setaria italica Si028202m.g I
TCM_019689 Theobroma cacao TCM_019689 I
TCM_045556 Theobroma cacao TCM_045556 I
Traes_2AS_6269D889E Triticum aestivum Traes_2AS_6269D889E I
Traes_2BS_B65714572 Triticum aestivum Traes_2BS_B65714572 I
TRIUR3_26571 Triticum urartu TRIUR3_26571 N