ATH1 (Arabidopsis lyrata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 fgenesh2_kg.7__829__AT4G32980.1 T218484_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.867 0.980
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.604 0.520
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.7__829__AT4G32980.1 Homeodomain 379 431

Links

Other Homeodomain family TFs
Other Arabidopsis lyrata TFs

953 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
anac094 Arabidopsis lyrata Al_scaffold_0007_3733 I 0.000
AMTR_s00032p00126420 Amborella trichopoda AMTR_s00032p00126420 I 0.000
Aquca_026_00367 Aquilegia coerulea Aquca_026_00367 I 0.000
ANAC094 Arabidopsis thaliana AT5G39820 D 0.000
BGIOSGA013656 Oryza indica BGIOSGA013656 I 0.000
BGIOSGA025120 Oryza indica BGIOSGA025120 N 0.000
BGIOSGA035784 Oryza indica BGIOSGA035784 N 0.000
Bostr.10058s0013 Boechera stricta Bostr.10058s0013 I 0.000
Bra028441 Brassica rapa Bra028441 I 0.000
BRADI1G06970 Brachypodium distachyon BRADI1G06970 I 0.000
BRADI1G58057 Brachypodium distachyon BRADI1G58057 I 0.000
Cagra.5905s0003 Capsella grandiflora Cagra.5905s0003 I 0.000
Carubv10006906m.g Capsella rubella Carubv10006906m.g I 0.000
cassava20477.m1 Manihot esculenta cassava20477.m1 I 0.000
cassava21730.m1 Manihot esculenta cassava21730.m1 I 0.000
cassava34069.m1 Manihot esculenta cassava34069.m1 I 0.000
chr2.LjT04L10.100.nc Lotus japonicus chr2.LjT04L10.100.nc I 0.000
Ciclev10005465m.g Citrus clementina Ciclev10005465m.g I 0.000
Ciclev10006695m.g Citrus clementina Ciclev10006695m.g I 0.000
Ciclev10032203m.g Citrus clementina Ciclev10032203m.g I 0.000
CM1835.10.nc Lotus japonicus CM1835.10.nc I 0.000
F775_15555 Aegilops tauschii F775_15555 N 0.000
F775_18203 Aegilops tauschii F775_18203 I 0.000
GLYMA02G45371 Glycine max GLYMA02G45371 I 0.000
GLYMA14G03441 Glycine max GLYMA14G03441 I 0.000
Gorai.001G091900 Gossypium raimondii Gorai.001G091900 I 0.000
Gorai.004G270300 Gossypium raimondii Gorai.004G270300 I 0.000
Gorai.004G270400 Gossypium raimondii Gorai.004G270400 I 0.000
Gorai.006G017700 Gossypium raimondii Gorai.006G017700 I 0.000
Gorai.009G357700 Gossypium raimondii Gorai.009G357700 I 0.000
Gorai.012G054800 Gossypium raimondii Gorai.012G054800 I 0.000
GRMZM2G112548 Zea mays GRMZM2G112548 I 0.000
GRMZM2G163251 Zea mays GRMZM2G163251 I 0.000
GRMZM2G479980 Zea mays GRMZM2G479980 N 0.000
GSMUA_Achr10G08420_001 Musa acuminata GSMUA_Achr10G08420_001 N 0.000
GSMUA_Achr4G32010_001 Musa acuminata GSMUA_Achr4G32010_001 I 0.000
GSMUA_Achr5G02170_001 Musa acuminata GSMUA_Achr5G02170_001 I 0.000
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I 0.000
GSMUA_Achr7G00860_001 Musa acuminata GSMUA_Achr7G00860_001 I 0.000
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I 0.000
LPERR03G30390 Leersia perrieri LPERR03G30390 I 0.000
LPERR07G02250 Leersia perrieri LPERR07G02250 N 0.000
LPERR12G16500 Leersia perrieri LPERR12G16500 N 0.000
MDP0000186765 Malus domestica MDP0000186765 I 0.000
MDP0000241821 Malus domestica MDP0000241821 I 0.000
mgf025649m Mimulus guttatus mgf025649m I 0.000
MLOC_4952 Hordeum vulgare MLOC_4952 N 0.000
MLOC_66348 Hordeum vulgare MLOC_66348 N 0.000
MTR_5g090970 Medicago truncatula MTR_5g090970 I 0.000
MTR_6g011860 Medicago truncatula MTR_6g011860 I 0.000
OB03G42970 Oryza brachyantha OB03G42970 I 0.000
OB07G11910 Oryza brachyantha OB07G11910 N 0.000
OB12G26370 Oryza brachyantha OB12G26370 N 0.000
OBART03G36060 Oryza barthii OBART03G36060 I 0.000
OBART07G02350 Oryza barthii OBART07G02350 N 0.000
OGLUM03G35790 Oryza glumaepatula OGLUM03G35790 I 0.000
OGLUM07G14360 Oryza glumaepatula OGLUM07G14360 N 0.000
OGLUM12G21360 Oryza glumaepatula OGLUM12G21360 I 0.000
OMERI03G33230 Oryza meridionalis OMERI03G33230 I 0.000
OMERI04G02400 Oryza meridionalis OMERI04G02400 N 0.000
OMERI12G14510 Oryza meridionalis OMERI12G14510 I 0.000
ONIVA03G11770 Oryza nivara ONIVA03G11770 N 0.000
ONIVA10G12510 Oryza nivara ONIVA10G12510 I 0.000
ONIVA12G18630 Oryza nivara ONIVA12G18630 I 0.000
OPUNC03G33030 Oryza punctata OPUNC03G33030 I 0.000
OPUNC07G01880 Oryza punctata OPUNC07G01880 N 0.000
OPUNC12G17870 Oryza punctata OPUNC12G17870 I 0.000
orange1.1g021785m.g Citrus sinensis orange1.1g021785m.g I 0.000
orange1.1g046948m.g Citrus sinensis orange1.1g046948m.g I 0.000
ORGLA03G0330500 Oryza glaberrima ORGLA03G0330500 I 0.000
ORGLA07G0020700 Oryza glaberrima ORGLA07G0020700 N 0.000
ORGLA12G0169600 Oryza glaberrima ORGLA12G0169600 I 0.000
ORUFI03G37500 Oryza rufipogon ORUFI03G37500 I 0.000
ORUFI07G02220 Oryza rufipogon ORUFI07G02220 N 0.000
ORUFI12G21970 Oryza rufipogon ORUFI12G21970 I 0.000
OS03G0777000 Oryza sativa OS03G0777000 I 0.000
Pavir.Ba02443 Panicum virgatum Pavir.Ba02443 I 0.000
Pavir.Ca02638 Panicum virgatum Pavir.Ca02638 N 0.000
Pavir.Cb00167 Panicum virgatum Pavir.Cb00167 I 0.000
Pavir.J03639 Panicum virgatum Pavir.J03639 I 0.000
Pavir.J26531 Panicum virgatum Pavir.J26531 I 0.000
PDK_20s1311871g001 Phoenix dactylifera PDK_20s1311871g001 I 0.000
PGSC0003DMG400031266 Solanum tuberosum PGSC0003DMG400031266 I 0.000
PK01104.1 Cannabis sativa PK01104.1 I 0.000
Pm006506 Prunus mume Pm006506 I 0.000
Pm011037 Prunus mume Pm011037 I 0.000
Pm014764 Prunus mume Pm014764 I 0.000
PRUPE_ppa022043mg Prunus persica PRUPE_ppa022043mg I 0.000
PRUPE_ppa022278mg Prunus persica PRUPE_ppa022278mg I 0.000
PRUPE_ppa026843mg Prunus persica PRUPE_ppa026843mg I 0.000
SapurV1A.0354s0230 Salix purpurea SapurV1A.0354s0230 I 0.000
Sb01g006410 Sorghum bicolor Sb01g006410 I 0.000
Sb02g002620 Sorghum bicolor Sb02g002620 N 0.000
Sb08g022560 Sorghum bicolor Sb08g022560 I 0.000
Si022714m.g Setaria italica Si022714m.g I 0.000
Si030477m.g Setaria italica Si030477m.g N 0.000
Si036447m.g Setaria italica Si036447m.g I 0.000
Solyc05g007550.1 Solanum lycopersicum Solyc05g007550.1 I 0.000
Solyc07g045030.2 Solanum lycopersicum Solyc07g045030.2 I 0.000
TCM_001955 Theobroma cacao TCM_001955 I 0.000
Thhalv10027860m.g Eutrema salsugineum Thhalv10027860m.g I 0.000
Traes_4BL_F1BECD544 Triticum aestivum Traes_4BL_F1BECD544 N 0.000
Traes_5BL_3900B9128 Triticum aestivum Traes_5BL_3900B9128 I 0.000
Traes_5BL_39FF03C5D Triticum aestivum Traes_5BL_39FF03C5D I 0.000
Traes_5BL_57ABE6426 Triticum aestivum Traes_5BL_57ABE6426 I 0.000
Traes_5DL_0924913F8 Triticum aestivum Traes_5DL_0924913F8 I 0.000
TRIUR3_23954 Triticum urartu TRIUR3_23954 N 0.000
TRIUR3_28933 Triticum urartu TRIUR3_28933 N 0.000
anac042 Vitis vinifera VIT_12s0028g00860 I 0.000
VIT_19s0027g00870 Vitis vinifera VIT_19s0027g00870 I 0.000