CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LPERR03G27630
(
Leersia perrieri
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
LPERR03G27630
T220241_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATH1
M10627_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATH1_01
0.842
0.706
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN
NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.626
0.574
MEIS3
M03093_2.00
Homo sapiens
DTGACANN
NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.606
0.447
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.602
0.412
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.602
0.412
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.602
0.412
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LPERR03G27630.1
Homeodomain
507
556
SVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWK
LPERR03G27630.2
Homeodomain
115
168
LPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWK
Links
Other
Homeodomain
family TFs
Other
Leersia perrieri
TFs
1014 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy