OB03G10760 (Oryza brachyantha)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OB03G10760 T221231_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.848 0.893
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.848 0.893
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.845 0.893
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.845 0.893
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.845 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB03G10760.1 Homeodomain 26 85

Links

Other Homeodomain family TFs
Other Oryza brachyantha TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BXY_1422600 Bursaphelenchus xylophilus BXY_1422600 N
GPLIN_000229700 Globodera pallida GPLIN_000229700 N
GPLIN_000654700 Globodera pallida GPLIN_000654700 N
L596_g20787 Steinernema carpocapsae L596_g20787 N
L892_g24390 Steinernema scapterisci L892_g24390 N
L893_g20254 Steinernema glaseri L893_g20254 N
L898_g31117 Steinernema monticolum L898_g31117 N
maker-nMf.1.1.scaf01349-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf01349-augustus-gene-0.6 N
MhA1_Contig271.frz3.gene54 Meloidogyne hapla MhA1_Contig271.frz3.gene54 N
PTRK_0001103000 Parastrongyloides trichosuri PTRK_0001103000 N
PTRK_0001103100 Parastrongyloides trichosuri PTRK_0001103100 N
RSKR_0000655600 Rhabditophanes kr3021 RSKR_0000655600 N
SPAL_0001507300 Strongyloides papillosus SPAL_0001507300 N
SPAL_0001507400 Strongyloides papillosus SPAL_0001507400 N
SSTP_0001047500 Strongyloides stercoralis SSTP_0001047500 N
SSTP_0001047600 Strongyloides stercoralis SSTP_0001047600 N
SVE_0204700 Strongyloides venezuelensis SVE_0204700 N
SVE_0204800 Strongyloides venezuelensis SVE_0204800 N