CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OMERI03G04970 *(Oryza meridionalis)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	OMERI03G04970	T221565_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.861	0.946
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.861	0.946
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.829	0.839
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.817	0.839
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.817	0.839
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.817	0.839
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.817	0.839
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.804	0.821
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.800	0.804
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.800	0.804
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.800	0.804
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.796	0.804
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.796	0.804
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.796	0.804
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.796	0.804
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.738	0.661
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.738	0.661
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.736	0.625
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.736	0.625
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.731	0.589
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.731	0.589
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.719	0.893
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.719	0.893
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.703	0.821
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.703	0.821
ATHB-7 M02043_2.00	Arabidopsis thaliana	NHWTGATTGN	NCAATCAWDN	PBM Weirauch et al.(2014) pTH8090	0.600	0.625
ATHB-7 M06911_2.00	Arabidopsis thaliana	NHYCAATCATTSW	WSAATGATTGRDN	Dap-seq OMalley et al.(2016) ATHB7_col_a	0.600	0.625
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OMERI03G04970.1	Homeodomain	123	178	EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Oryza meridionalis* TFs

819 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AC233850.1_FG005	Zea mays	AC233850.1_FG005	I	0.000
BGIOSGA006304	Oryza indica	BGIOSGA006304	I	0.000
Bo9g106030	Brassica oleracea	Bo9g106030	I	0.000
Bra002398	Brassica rapa	Bra002398	I	0.000
Chro.10180	Cryptosporidium hominis	Chro.10180	N	0.000
Cla018710	Citrullus lanatus	Cla018710	I	0.000
CMU_036300	Cryptosporidium muris	CMU_036300	I	0.000
Contig21974.0.g77	Oxytricha trifallax	Contig21974.0.g77	I	0.000
Cucsa.083720	Cucumis sativus	Cucsa.083720	I	0.000
DME_0000454601	Dracunculus medinensis	DME_0000454601	I	0.000
e_gw1.364.12.1	Physcomitrella patens	e_gw1.364.12.1	I	0.000
F775_07838	Aegilops tauschii	F775_07838	I	0.000
fgenesh2_pg.2_#_1160	Fragilariopsis cylindrus	fgenesh2_pg.2_#_1160	I	0.000
maker-piw_contig_136-snap-gene-0.25	Pythium iwayamai	maker-piw_contig_136-snap-gene-0.25	I	0.000
OB02G27210	Oryza brachyantha	OB02G27210	I	0.000
OBART02G19430	Oryza barthii	OBART02G19430	I	0.000
OGLUM02G19730	Oryza glumaepatula	OGLUM02G19730	I	0.000
OLONG_023990	Oryza longistaminata	OLONG_023990	I	0.000
OMERI02G19320	Oryza meridionalis	OMERI02G19320	I	0.000
ONIVA02G21500	Oryza nivara	ONIVA02G21500	I	0.000
OPUNC02G17370	Oryza punctata	OPUNC02G17370	I	0.000
ORGLA02G0166600	Oryza glaberrima	ORGLA02G0166600	I	0.000
ORUFI02G20490	Oryza rufipogon	ORUFI02G20490	I	0.000
OS02G0537500	Oryza sativa	OS02G0537500	I	0.000
OSTLU_119601	Ostreococcus lucimarinus	OSTLU_119601	I	0.000
Pavir.Ab01863	Panicum virgatum	Pavir.Ab01863	I	0.000
Pavir.Ga01887	Panicum virgatum	Pavir.Ga01887	I	0.000
Pavir.J29330	Panicum virgatum	Pavir.J29330	I	0.000
Pavir.J38646	Panicum virgatum	Pavir.J38646	I	0.000
Ppa-efl-2	Pristionchus pacificus	PPA00217	I	0.000
Sb04g021970	Sorghum bicolor	Sb04g021970	I	0.000
scaffold491-EXSNAP2012.7	Pristionchus exspectatus	scaffold491-EXSNAP2012.7	I	0.000
Si017108m.g	Setaria italica	Si017108m.g	I	0.000
Traes_2AL_8EC530273	Triticum aestivum	Traes_2AL_8EC530273	I	0.000
Traes_2BL_1E7B7A8CA	Triticum aestivum	Traes_2BL_1E7B7A8CA	I	0.000
Traes_2DL_BD8048C15	Triticum aestivum	Traes_2DL_BD8048C15	I	0.000
TRE_0001857001	Trichobilharzia regenti	TRE_0001857001	I	0.000

OMERI03G04970 (Oryza meridionalis) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

819 Related TFs

OMERI03G04970 **(Oryza meridionalis)
Homeodomain**