HOX13 (Oryza sativa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OS03G0188900 T221998_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.845 0.768
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.822 0.696
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.822 0.696
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.812 0.750
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.812 0.750
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.812 0.750
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.812 0.750
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.808 0.714
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.808 0.714
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.808 0.714
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.808 0.714
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.790 0.732
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.790 0.732
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.790 0.732
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.790 0.732
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.754 0.625
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.754 0.625
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.751 0.661
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.751 0.661
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.749 0.625
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.749 0.625
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.687 0.714
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.687 0.714
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.667 0.696
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.667 0.696
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OS03T0188900-01 Homeodomain 71 126
OS03T0188900-02 Homeodomain 57 112

Links

Other Homeodomain family TFs
Other Oryza sativa TFs

803 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_192725 Agaricus bisporus AGABI2DRAFT_192725 I 0.000
BOTBODRAFT_214576 Botryobasidium botryosum BOTBODRAFT_214576 I 0.000
CAD26261 Encephalitozoon cuniculi CAD26261 D 0.000
CC1G_01962 Coprinopsis cinerea CC1G_01962 I 0.000
CERSUDRAFT_94820 Ceriporiopsis subvermispora CERSUDRAFT_94820 I 0.000
CNJ00280 Cryptococcus neoformans CNJ00280 I 0.000
CY34DRAFT_106181 Suillus luteus CY34DRAFT_106181 I 0.000
CY34DRAFT_109842 Suillus luteus CY34DRAFT_109842 I 0.000
warA Dictyostelium discoideum DDB_G0291075 I 0.000
E5Q_01806 Mixia osmundae E5Q_01806 I 0.000
E5Q_03771 Mixia osmundae E5Q_03771 I 0.000
EDEG_01594 Edhazardia aedis EDEG_01594 I 0.000
EFA86584.1 Polysphondylium pallidum EFA86584.1 I 0.000
EHEL_031090 Encephalitozoon hellem EHEL_031090 I 0.000
Eint_031070 Encephalitozoon intestinalis Eint_031070 I 0.000
EROM_031050 Encephalitozoon romaleae EROM_031050 I 0.000
estExt_fgenesh1_pg.C_10219 Sporobolomyces roseus estExt_fgenesh1_pg.C_10219 I 0.000
estExt_fgeneshDP_pg.C_350041 Dictyostelium purpureum estExt_fgeneshDP_pg.C_350041 I 0.000
e_gw1.10.235.1 Phycomyces blakesleeanus e_gw1.10.235.1 I 0.000
fgenesh1_pg.C_scaffold_15000074 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_15000074 I 0.000
fgeneshMC_pg.1_#_125 Mucor circinelloides fgeneshMC_pg.1_#_125 I 0.000
fgeneshMC_pg.1_#_1591 Mucor circinelloides fgeneshMC_pg.1_#_1591 I 0.000
fgeneshMC_pg.1_#_69 Mucor circinelloides fgeneshMC_pg.1_#_69 I 0.000
fgeneshMC_pg.2_#_8 Mucor circinelloides fgeneshMC_pg.2_#_8 I 0.000
fgeneshMC_pg.4_#_986 Mucor circinelloides fgeneshMC_pg.4_#_986 I 0.000
fgeneshMC_pg.7_#_205 Mucor circinelloides fgeneshMC_pg.7_#_205 N 0.000
fgeneshMC_pg.7_#_41 Mucor circinelloides fgeneshMC_pg.7_#_41 I 0.000
fgeneshPB_pg.11__229 Phycomyces blakesleeanus fgeneshPB_pg.11__229 N 0.000
fgeneshPB_pg.18__155 Phycomyces blakesleeanus fgeneshPB_pg.18__155 I 0.000
fgeneshPB_pg.6__195 Phycomyces blakesleeanus fgeneshPB_pg.6__195 I 0.000
FOMPIDRAFT_1128018 Fomitopsis pinicola FOMPIDRAFT_1128018 I 0.000
GALMADRAFT_211191 Galerina marginata GALMADRAFT_211191 I 0.000
GLOINDRAFT_21145 Rhizophagus irregularis GLOINDRAFT_21145 I 0.000
GLOINDRAFT_4254 Rhizophagus irregularis GLOINDRAFT_4254 I 0.000
GLOINDRAFT_43985 Rhizophagus irregularis GLOINDRAFT_43985 I 0.000
GLOTRDRAFT_92391 Gloeophyllum trabeum GLOTRDRAFT_92391 I 0.000
H311_05138 Anncaliia algerae H311_05138 I 0.000
J056_004115 Wallemia ichthyophaga J056_004115 I 0.000
JAAARDRAFT_47621 Jaapia argillacea JAAARDRAFT_47621 I 0.000
K443DRAFT_127593 Laccaria amethystina K443DRAFT_127593 I 0.000
KNAG_0A05600 Kazachstania naganishii KNAG_0A05600 I 0.000
L804_00025 Cryptococcus gattii L804_00025 I 0.000
LACBIDRAFT_293988 Laccaria bicolor LACBIDRAFT_293988 I 0.000
M378DRAFT_8263 Amanita muscaria M378DRAFT_8263 I 0.000
M404DRAFT_74218 Pisolithus tinctorius M404DRAFT_74218 I 0.000
M407DRAFT_11655 Tulasnella calospora M407DRAFT_11655 I 0.000
M407DRAFT_4599 Tulasnella calospora M407DRAFT_4599 I 0.000
M413DRAFT_413744 Hebeloma cylindrosporum M413DRAFT_413744 I 0.000
M896_030550 Ordospora colligata M896_030550 I 0.000
MELLADRAFT_35504 Melampsora laricipopulina MELLADRAFT_35504 I 0.000
Moror_6758 Moniliophthora roreri Moror_6758 I 0.000
MVLG_00113 Microbotryum violaceum MVLG_00113 I 0.000
MVLG_02963 Microbotryum violaceum MVLG_02963 I 0.000
NAPIS_ORF00184 Nosema apis NAPIS_ORF00184 I 0.000
NAPIS_ORF00325 Nosema apis NAPIS_ORF00325 I 0.000
NBO_11g0012 Nosema bombycis NBO_11g0012 I 0.000
NBO_6g0031 Nosema bombycis NBO_6g0031 I 0.000
NBO_85g0005 Nosema bombycis NBO_85g0005 I 0.000
NCAS_0B05980 Naumovozyma castellii NCAS_0B05980 I 0.000
NCER_100211 Nosema ceranae NCER_100211 I 0.000
NCER_100315 Nosema ceranae NCER_100315 I 0.000
NDAI_0B03290 Naumovozyma dairenensis NDAI_0B03290 I 0.000
NEMVEDRAFT_v1g105595 Nematostella vectensis NEMVEDRAFT_v1g105595 D 0.000
NEPG_01845 Nematocida parisii ertm1 NEPG_01845 I 0.000
NERG_00880 Nematocida sp NERG_00880 I 0.000
PAXRUDRAFT_10369 Paxillus rubicundulus PAXRUDRAFT_10369 I 0.000
PFL1_02807 Pseudozyma flocculosa PFL1_02807 I 0.000
PFL1_03213 Pseudozyma flocculosa PFL1_03213 I 0.000
PGTG_00338 Puccinia graminis PGTG_00338 I 0.000
PHACADRAFT_257545 Phanerochaete carnosa PHACADRAFT_257545 I 0.000
PHLGIDRAFT_55548 Phlebiopsis gigantea PHLGIDRAFT_55548 I 0.000
PHSY_003535 Pseudozyma hubeiensis PHSY_003535 I 0.000
PIIN_02203 Piriformospora indica PIIN_02203 I 0.000
PILCRDRAFT_110903 Piloderma croceum PILCRDRAFT_110903 I 0.000
PISMIDRAFT_65337 Pisolithus microcarpus PISMIDRAFT_65337 I 0.000
PLEOSDRAFT_173849 Pleurotus ostreatus PLEOSDRAFT_173849 I 0.000
POSPLDRAFT_98870 Postia placenta POSPLDRAFT_98870 I 0.000
PTTG_03012 Puccinia triticina PTTG_03012 I 0.000
PTTG_07330 Puccinia triticina PTTG_07330 I 0.000
RHTO_02593 Rhodosporidium toruloides RHTO_02593 I 0.000
RHTO_06229 Rhodosporidium toruloides RHTO_06229 I 0.000
RO3G_02291 Rhizopus oryzae RO3G_02291 I 0.000
RO3G_03200 Rhizopus oryzae RO3G_03200 I 0.000
RO3G_11930 Rhizopus oryzae RO3G_11930 I 0.000
RO3G_13360 Rhizopus oryzae RO3G_13360 I 0.000
RTG_01934 Rhodotorula glutinis RTG_01934 I 0.000
Scas_Contig613.11 Saccharomyces castellii Scas_Contig613.11 I 0.000
SCHCODRAFT_257987 Schizophyllum commune SCHCODRAFT_257987 I 0.000
SCLCIDRAFT_97512 Scleroderma citrinum SCLCIDRAFT_97512 I 0.000
SERLA73DRAFT_72643 Serpula lacrymans SERLA73DRAFT_72643 I 0.000
SPPG_05107 Spizellomyces punctatus SPPG_05107 I 0.000
sr15806 Sporisorium reilianum sr15806 I 0.000
THOM_0497 Trachipleistophora hominis THOM_0497 I 0.000
UHOR_07039 Ustilago hordei UHOR_07039 I 0.000
UM04928 Ustilago maydis UM04928 D 0.000
V565_070630 Rhizoctonia solani V565_070630 I 0.000
VCUG_00708 Vavraia culicis VCUG_00708 I 0.000
WALSEDRAFT_59197 Wallemia sebi WALSEDRAFT_59197 I 0.000
YALI0_F16852g Yarrowia lipolytica YALI0_F16852g I 0.000