PGSC0003DMG400008057 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400008057 T222164_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.810 0.681
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.638 0.596
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.447
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.447
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.447
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.447
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400020824 Homeodomain 242 291
PGSC0003DMT400020825 Homeodomain 482 530

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

1013 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002403 Calypte anna Aan_R002403 N 0.000
Alligator_sinensis_CCG001820.1 Alligator sinensis Alligator_sinensis_CCG001820.1 N 0.000
Cmyd_10005054 Chelonia mydas Cmyd_10005054 N 0.000
GATAD2B Anolis carolinensis ENSACAG00000008791 N 0.000
ENSAMEG00000012036 Ailuropoda melanoleuca ENSAMEG00000012036 N 0.000
ENSAMXG00000001813 Astyanax mexicanus ENSAMXG00000001813 N 0.000
ENSAMXG00000014687 Astyanax mexicanus ENSAMXG00000014687 N 0.000
ENSAPLG00000011761 Anas platyrhynchos ENSAPLG00000011761 N 0.000
GATAD2B Bos taurus ENSBTAG00000006678 N 0.000
ENSBTAP00000008766-D1 Bos grunniens ENSBTAP00000008766-D1 N 0.000
GATAD2B Canis familiaris ENSCAFG00000017433 N 0.000
GATAD2B Choloepus hoffmanni ENSCHOG00000013411 N 0.000
GATAD2B Callithrix jacchus ENSCJAG00000010131 N 0.000
GATAD2B Cavia porcellus ENSCPOG00000010326 N 0.000
ENSCSAG00000001881 Chlorocebus sabaeus ENSCSAG00000001881 N 0.000
gatad2b Danio rerio ENSDARG00000005834 N 0.000
GATAD2B Dasypus novemcinctus ENSDNOG00000048326 N 0.000
Gatad2b Dipodomys ordii ENSDORG00000013431 N 0.000
GATAD2B Equus caballus ENSECAG00000011357 N 0.000
GATAD2B Felis catus ENSFCAG00000002751 N 0.000
GATAD2B Homo sapiens ENSG00000143614 N 0.000
gatad2b Gasterosteus aculeatus ENSGACG00000000510 N 0.000
ENSGALG00000029154 Gallus gallus ENSGALG00000029154 N 0.000
GATAD2B Gorilla gorilla ENSGGOG00000012553 N 0.000
ENSGMOG00000013793 Gadus morhua ENSGMOG00000013793 N 0.000
ENSLACG00000013888 Latimeria chalumnae ENSLACG00000013888 N 0.000
GATAD2B Loxodonta africana ENSLAFG00000002667 N 0.000
ENSLOCG00000008705 Lepisosteus oculatus ENSLOCG00000008705 N 0.000
ENSMEUG00000007551 Macropus eugenii ENSMEUG00000007551 N 0.000
ENSMGAG00000017205 Meleagris gallopavo ENSMGAG00000017205 N 0.000
GATAD2B Microcebus murinus ENSMICG00000008874 N 0.000
GATAD2B Myotis lucifugus ENSMLUG00000004859 N 0.000
GATAD2B Macaca mulatta ENSMMUG00000002696 N 0.000
GATAD2B Monodelphis domestica ENSMODG00000017336 N 0.000
ENSMPUG00000008136 Mustela putorius furo ENSMPUG00000008136 N 0.000
Gatad2b Mus musculus ENSMUSG00000042390 N 0.000
ENSNLEG00000010649 Nomascus leucogenys ENSNLEG00000010649 N 0.000
ENSOARG00000001486 Ovis aries ENSOARG00000001486 N 0.000
GATAD2B Oryctolagus cuniculus ENSOCUG00000008135 N 0.000
GATAD2B Otolemur garnettii ENSOGAG00000004606 N 0.000
ENSONIG00000010369 Oreochromis niloticus ENSONIG00000010369 N 0.000
GATAD2B Ochotona princeps ENSOPRG00000000027 N 0.000
gatad2b Oryzias latipes ENSORLG00000010868 N 0.000
ENSP00000357644 Macaca fascicularis ENSP00000357644 N 0.000
ENSPANG00000008972 Papio anubis ENSPANG00000008972 N 0.000
GATAD2B Procavia capensis ENSPCAG00000001797 N 0.000
ENSPFOG00000008182 Poecilia formosa ENSPFOG00000008182 N 0.000
ENSPPYG00000029612 Pongo abelii ENSPPYG00000029612 N 0.000
ENSPSIG00000004590 Pelodiscus sinensis ENSPSIG00000004590 N 0.000
GATAD2B Pan troglodytes ENSPTRG00000001364 N 0.000
GATAD2B Pteropus vampyrus ENSPVAG00000011082 N 0.000
Gatad2b Rattus norvegicus ENSRNOG00000015553 N 0.000
GATAD2B Sorex araneus ENSSARG00000011365 N 0.000
ENSSHAG00000011064 Sarcophilus harrisii ENSSHAG00000011064 N 0.000
GATAD2B Sus scrofa ENSSSCG00000006562 N 0.000
ENSSTOG00000005407 Ictidomys tridecemlineatus ENSSTOG00000005407 N 0.000
GATAD2B Tupaia belangeri ENSTBEG00000015791 N 0.000
gatad2b Tetraodon nigroviridis ENSTNIG00000002290 N 0.000
gatad2b Takifugu rubripes ENSTRUG00000002877 N 0.000
GATAD2B Tursiops truncatus ENSTTRG00000014779 N 0.000
GATAD2B Vicugna pacos ENSVPAG00000010268 N 0.000
ENSXMAG00000010412 Xiphophorus maculatus ENSXMAG00000010412 N 0.000
Gfo_R009850 Geospiza fortis Gfo_R009850 N 0.000
Myotis_brandtii_GATAD2B_10031899 Myotis brandtii Myotis_brandtii_GATAD2B_10031899 N 0.000
Ogr01497 Ophisaurus gracilis Ogr01497 N 0.000
Pvit_02350 Pogona vitticeps Pvit_02350 N 0.000
gatad2b Xenopus tropicalis XB-GENE-5995517 N 0.000