PGSC0003DMG400021423 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400021423 T222197_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.850 0.895
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.793 0.772
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.793 0.772
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.792 0.737
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.792 0.737
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.792 0.737
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.773 0.737
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.773 0.737
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.752 0.772
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.752 0.772
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.752 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400055198 Homeodomain 120 149
PGSC0003DMT400055198 Homeodomain 168 200
PGSC0003DMT400055199 Homeodomain 120 176

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

701 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R000701 Calypte anna Aan_R000701 N 0.000
Afo_R002412 Aptenodytes forsteri Afo_R002412 N 0.000
Alligator_sinensis_CCG003108.1 Alligator sinensis Alligator_sinensis_CCG003108.1 N 0.000
Brh_R006311 Buceros rhinoceros Brh_R006311 N 0.000
Cmyd_10015463 Chelonia mydas Cmyd_10015463 N 0.000
ENSAMEG00000011882 Ailuropoda melanoleuca ENSAMEG00000011882 N 0.000
ENSAPLG00000006218 Anas platyrhynchos ENSAPLG00000006218 N 0.000
GATAD2A Bos taurus ENSBTAG00000003034 N 0.000
GATAD2A Canis familiaris ENSCAFG00000014267 N 0.000
GATAD2A Callithrix jacchus ENSCJAG00000005685 N 0.000
GATAD2A Cavia porcellus ENSCPOG00000015396 N 0.000
ENSCSAG00000005096 Chlorocebus sabaeus ENSCSAG00000005096 N 0.000
GATAD2A Dasypus novemcinctus ENSDNOG00000041689 N 0.000
Gatad2a Dipodomys ordii ENSDORG00000008536 N 0.000
GATAD2A Equus caballus ENSECAG00000012875 N 0.000
ENSFALG00000009125 Ficedula albicollis ENSFALG00000009125 N 0.000
GATAD2A Felis catus ENSFCAG00000014327 N 0.000
GATAD2A Homo sapiens ENSG00000167491 N 0.000
gatad2ab Gasterosteus aculeatus ENSGACG00000013045 N 0.000
ENSGALG00000002928 Gallus gallus ENSGALG00000002928 N 0.000
GATAD2A Gorilla gorilla ENSGGOG00000005973 N 0.000
ENSGMOG00000007431 Gadus morhua ENSGMOG00000007431 N 0.000
ENSLACG00000008883 Latimeria chalumnae ENSLACG00000008883 N 0.000
ENSLOCG00000004919 Lepisosteus oculatus ENSLOCG00000004919 N 0.000
GATAD2A Meleagris gallopavo ENSMGAG00000004036 N 0.000
GATAD2A Microcebus murinus ENSMICG00000015636 N 0.000
GATAD2A Myotis lucifugus ENSMLUG00000017364 N 0.000
ENSMMUG00000022298 Macaca mulatta ENSMMUG00000022298 N 0.000
GATAD2A Monodelphis domestica ENSMODG00000007189 N 0.000
ENSMPUG00000015399 Mustela putorius furo ENSMPUG00000015399 N 0.000
ENSNLEG00000006277 Nomascus leucogenys ENSNLEG00000006277 N 0.000
GATAD2A Ornithorhynchus anatinus ENSOANG00000006409 N 0.000
ENSOARG00000007874 Ovis aries ENSOARG00000007874 N 0.000
GATAD2A Oryctolagus cuniculus ENSOCUG00000017513 N 0.000
GATAD2A Otolemur garnettii ENSOGAG00000007442 N 0.000
ENSONIG00000002454 Oreochromis niloticus ENSONIG00000002454 N 0.000
gatad2ab Oryzias latipes ENSORLG00000000720 N 0.000
ENSP00000384899 Macaca fascicularis ENSP00000384899 N 0.000
ENSP00000384899-D1 Bos grunniens ENSP00000384899-D1 N 0.000
ENSPANG00000011632 Papio anubis ENSPANG00000011632 N 0.000
ENSPFOG00000002553 Poecilia formosa ENSPFOG00000002553 N 0.000
ENSPFOG00000003089 Poecilia formosa ENSPFOG00000003089 N 0.000
ENSPMAG00000000934 Petromyzon marinus ENSPMAG00000000934 N 0.000
ENSPPYG00000009769 Pongo abelii ENSPPYG00000009769 N 0.000
ENSPSIG00000015717 Pelodiscus sinensis ENSPSIG00000015717 N 0.000
GATAD2A Pan troglodytes ENSPTRG00000010739 N 0.000
GATAD2A Sorex araneus ENSSARG00000005282 N 0.000
ENSSHAG00000013178 Sarcophilus harrisii ENSSHAG00000013178 N 0.000
GATAD2A Sus scrofa ENSSSCG00000013938 N 0.000
ENSSTOG00000022640 Ictidomys tridecemlineatus ENSSTOG00000022640 N 0.000
GATAD2A Tupaia belangeri ENSTBEG00000015854 N 0.000
GATAD2A Taeniopygia guttata ENSTGUG00000013885 N 0.000
gatad2ab Tetraodon nigroviridis ENSTNIG00000013200 N 0.000
gatad2ab Takifugu rubripes ENSTRUG00000018122 N 0.000
ENSTSYG00000000285 Tarsius syrichta ENSTSYG00000000285 N 0.000
GATAD2A Tursiops truncatus ENSTTRG00000009875 N 0.000
GATAD2A Vicugna pacos ENSVPAG00000003278 N 0.000
ENSXMAG00000012323 Xiphophorus maculatus ENSXMAG00000012323 N 0.000
Gfo_R007527 Geospiza fortis Gfo_R007527 N 0.000
Myotis_brandtii_GATAD2A_10018560 Myotis brandtii Myotis_brandtii_GATAD2A_10018560 N 0.000
Ogr08049 Ophisaurus gracilis Ogr08049 N 0.000
Pvit_05963 Pogona vitticeps Pvit_05963 N 0.000
Tal_R009898 Tyto alba Tal_R009898 N 0.000
gatad2a Xenopus tropicalis XB-GENE-1015730 N 0.000