POPTR_0001s28350 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0001s28350 T222470_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.645 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s28350.1 Homeodomain 19 75
POPTR_0001s28350.2 Homeodomain 19 75

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene05564-v1.0-hybrid Fragaria vesca gene05564-v1.0-hybrid N 0.000
gene12119-v1.0-hybrid Fragaria vesca gene12119-v1.0-hybrid I 0.000
gene25669-v1.0-hybrid Fragaria vesca gene25669-v1.0-hybrid N 0.000
gene30741-v1.0-hybrid Fragaria vesca gene30741-v1.0-hybrid I 0.000
MDP0000135652 Malus domestica MDP0000135652 I 0.000
MDP0000144516 Malus domestica MDP0000144516 I 0.000
PGSC0003DMG400023729 Solanum tuberosum PGSC0003DMG400023729 I 0.000
Solyc10g080030.1 Solanum lycopersicum Solyc10g080030.1 I 0.000