POPTR_0005s17390 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0005s17390 T222508_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.839 0.825
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.839 0.825
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.839 0.825
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.839 0.825
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.825 0.842
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.825 0.842
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.825 0.842
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.825 0.842
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.814 0.772
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.813 0.754
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.813 0.754
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.794 0.737
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.794 0.737
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.794 0.737
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.794 0.737
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.715 0.614
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.715 0.614
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.714 0.596
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.714 0.596
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.710 0.579
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.710 0.579
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.678 0.754
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.678 0.754
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.658 0.737
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.658 0.737
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.611 0.561
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.611 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s17390.1 Homeodomain 55 111
POPTR_0005s17390.2 Homeodomain 55 111

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

818 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003393 Calypte anna Aan_R003393 I 0.000
AATE011183 Anopheles atroparvus AATE011183 I 0.000
Afo_R014000 Aptenodytes forsteri Afo_R014000 I 0.000
Alligator_sinensis_CCG006462.1 Alligator sinensis Alligator_sinensis_CCG006462.1 I 0.000
ASIS008585 Anopheles sinensis ASIS008585 I 0.000
Brh_R009933 Buceros rhinoceros Brh_R009933 I 0.000
Cmyd_10014706 Chelonia mydas Cmyd_10014706 I 0.000
CEBPG Anolis carolinensis ENSACAG00000013617 I 0.000
ENSAMEG00000018841 Ailuropoda melanoleuca ENSAMEG00000018841 I 0.000
ENSAMXG00000026123 Astyanax mexicanus ENSAMXG00000026123 I 0.000
ENSAPLG00000000568 Anas platyrhynchos ENSAPLG00000000568 I 0.000
ENSBTAP00000023345-D1 Bos grunniens ENSBTAP00000023345-D1 I 0.000
CEBPG Canis familiaris ENSCAFG00000007405 I 0.000
CEBPG Callithrix jacchus ENSCJAG00000035363 I 0.000
ENSCPOG00000014835 Cavia porcellus ENSCPOG00000014835 I 0.000
ENSCSAG00000018517 Chlorocebus sabaeus ENSCSAG00000018517 I 0.000
cebpg Danio rerio ENSDARG00000036073 I 0.000
CEBPG Dasypus novemcinctus ENSDNOG00000003950 I 0.000
CEBPG Equus caballus ENSECAG00000004879 I 0.000
CEBPG Erinaceus europaeus ENSEEUG00000012797 I 0.000
CEBPG Echinops telfairi ENSETEG00000017071 I 0.000
ENSFALG00000014352 Ficedula albicollis ENSFALG00000014352 I 0.000
CEBPG Felis catus ENSFCAG00000028096 I 0.000
CEBPG Homo sapiens ENSG00000153879 D 0.000
cebpg Gasterosteus aculeatus ENSGACG00000017539 I 0.000
ENSGALG00000004867 Gallus gallus ENSGALG00000004867 I 0.000
CEBPG Gorilla gorilla ENSGGOG00000012138 I 0.000
ENSLACG00000005088 Latimeria chalumnae ENSLACG00000005088 I 0.000
CEBPG Loxodonta africana ENSLAFG00000017998 I 0.000
ENSLOCG00000017587 Lepisosteus oculatus ENSLOCG00000017587 I 0.000
CEBPG Meleagris gallopavo ENSMGAG00000015603 I 0.000
ENSMICG00000013426 Microcebus murinus ENSMICG00000013426 I 0.000
CEBPG Myotis lucifugus ENSMLUG00000005181 I 0.000
CEBPG Macaca mulatta ENSMMUG00000006127 I 0.000
CEBPG Monodelphis domestica ENSMODG00000023494 I 0.000
ENSMPUG00000018937 Mustela putorius furo ENSMPUG00000018937 I 0.000
Cebpg Mus musculus ENSMUSG00000056216 D 0.000
ENSNLEG00000018562 Nomascus leucogenys ENSNLEG00000018562 I 0.000
CEBPG Ornithorhynchus anatinus ENSOANG00000008143 I 0.000
ENSOARG00000011183 Ovis aries ENSOARG00000011183 I 0.000
CEBPG Oryctolagus cuniculus ENSOCUG00000017036 I 0.000
CEBPG Otolemur garnettii ENSOGAG00000010436 I 0.000
ENSONIG00000020606 Oreochromis niloticus ENSONIG00000020606 I 0.000
CEBPG Ochotona princeps ENSOPRG00000012139 I 0.000
cebpg Oryzias latipes ENSORLG00000018652 I 0.000
ENSP00000284000 Macaca fascicularis ENSP00000284000 I 0.000
ENSPANG00000016413 Papio anubis ENSPANG00000016413 I 0.000
ENSPPYG00000009828 Pongo abelii ENSPPYG00000009828 I 0.000
ENSPSIG00000000373 Pelodiscus sinensis ENSPSIG00000000373 I 0.000
CEBPG Pan troglodytes ENSPTRG00000010808 I 0.000
CEBPG Pteropus vampyrus ENSPVAG00000012689 I 0.000
Cebpg Rattus norvegicus ENSRNOG00000021144 I 0.000
CEBPG Sorex araneus ENSSARG00000004224 I 0.000
ENSSHAG00000014577 Sarcophilus harrisii ENSSHAG00000014577 I 0.000
CEBPG Sus scrofa ENSSSCG00000002867 I 0.000
ENSSTOG00000007596 Ictidomys tridecemlineatus ENSSTOG00000007596 I 0.000
CEBPG Taeniopygia guttata ENSTGUG00000009474 I 0.000
cebpg Tetraodon nigroviridis ENSTNIG00000001629 I 0.000
cebpg Takifugu rubripes ENSTRUG00000006448 I 0.000
ENSTSYG00000002513 Tarsius syrichta ENSTSYG00000002513 I 0.000
CEBPG Vicugna pacos ENSVPAG00000007215 I 0.000
ENSXMAG00000019691 Xiphophorus maculatus ENSXMAG00000019691 I 0.000
estExt_fgenesh2_pg.C_570127 Branchiostoma floridae estExt_fgenesh2_pg.C_570127 I 0.000
estExt_fgenesh2_pg.C_760066 Branchiostoma floridae estExt_fgenesh2_pg.C_760066 I 0.000
Gfo_R009960 Geospiza fortis Gfo_R009960 I 0.000
HMEL013192 Heliconius melpomene HMEL013192 I 0.000
KGM_20079 Danaus plexippus KGM_20079 I 0.000
LDEC004833 Leptinotarsa decemlineata LDEC004833 I 0.000
Myotis_brandtii_CEBPG_10035215 Myotis brandtii Myotis_brandtii_CEBPG_10035215 I 0.000
Ogr04139 Ophisaurus gracilis Ogr04139 I 0.000
Pvit_06802 Pogona vitticeps Pvit_06802 I 0.000
Tal_R011314 Tyto alba Tal_R011314 I 0.000
TC009211 Tribolium castaneum TC009211 I 0.000
tetur02g05060 Tetranychus urticae tetur02g05060 I 0.000
tetur11g01620 Tetranychus urticae tetur11g01620 I 0.000
cebpg.L Xenopus laevis XB-GENE-6077777 I 0.000
cebpg Xenopus tropicalis XB-GENE-919758 I 0.000
YQE_08773 Dendroctonus ponderosae YQE_08773 I 0.000