POPTR_0006s24680 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0006s24680 T222518_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.855 0.898
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.604 0.510
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s24680.1 Homeodomain 472 523

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

953 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R004000 Aptenodytes forsteri Afo_R004000 N
Alligator_sinensis_CCG004396.1 Alligator sinensis Alligator_sinensis_CCG004396.1 N
Brh_R011240 Buceros rhinoceros Brh_R011240 N
Cmyd_10004225 Chelonia mydas Cmyd_10004225 N
ZBTB41 Anolis carolinensis ENSACAG00000009459 N
ENSAMEG00000017562 Ailuropoda melanoleuca ENSAMEG00000017562 N
ENSAPLG00000007731 Anas platyrhynchos ENSAPLG00000007731 N
ZBTB41 Bos taurus ENSBTAG00000002291 N
ZBTB41 Canis familiaris ENSCAFG00000011381 N
ZBTB41 Callithrix jacchus ENSCJAG00000004794 N
ENSCSAG00000013610 Chlorocebus sabaeus ENSCSAG00000013610 N
ZBTB41 Homo sapiens ENSG00000177888 N
zbtb41 Gasterosteus aculeatus ENSGACG00000016102 N
ENSGALG00000002305 Gallus gallus ENSGALG00000002305 N
ZBTB41 Gorilla gorilla ENSGGOG00000004843 N
ENSGMOG00000002344 Gadus morhua ENSGMOG00000002344 N
ZBTB41 Loxodonta africana ENSLAFG00000012902 N
ZBTB41 Myotis lucifugus ENSMLUG00000016964 N
ZBTB41 Monodelphis domestica ENSMODG00000012684 N
Zbtb41 Mus musculus ENSMUSG00000033964 N
ENSNLEG00000018056 Nomascus leucogenys ENSNLEG00000018056 N
ENSOARG00000015070 Ovis aries ENSOARG00000015070 N
ZBTB41 Oryctolagus cuniculus ENSOCUG00000014765 N
ZBTB41 Otolemur garnettii ENSOGAG00000012893 N
ENSONIG00000010729 Oreochromis niloticus ENSONIG00000010729 N
ENSP00000356375 Macaca fascicularis ENSP00000356375 N
ENSP00000356375-D1 Bos grunniens ENSP00000356375-D1 N
ENSPFOG00000006537 Poecilia formosa ENSPFOG00000006537 N
ENSPPYG00000000388 Pongo abelii ENSPPYG00000000388 N
ZBTB41 Pan troglodytes ENSPTRG00000001808 N
Zbtb41 Rattus norvegicus ENSRNOG00000011137 N
ZBTB41 Taeniopygia guttata ENSTGUG00000004282 N
zbtb41 Tetraodon nigroviridis ENSTNIG00000007805 N
zbtb41 Takifugu rubripes ENSTRUG00000009203 N
ZBTB41 Tursiops truncatus ENSTTRG00000008689 N
ZBTB41 Vicugna pacos ENSVPAG00000006551 N
ENSXMAG00000004794 Xiphophorus maculatus ENSXMAG00000004794 N
Gfo_R006641 Geospiza fortis Gfo_R006641 N
Myotis_brandtii_ZBTB41_10008236 Myotis brandtii Myotis_brandtii_ZBTB41_10008236 N
Tal_R010443 Tyto alba Tal_R010443 N
zbtb41 Xenopus tropicalis XB-GENE-877334 N