CUP9 (Saccharomyces cerevisiae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 YPL177C T224763_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CUP9
M00059_2.00		 Saccharomyces cerevisiae
TGACABHW
WDVTGTCA		 PBM
Badis et al.(2008)
CUP9_4508		 (Direct) (Direct)
CUP9
M01553_2.00		 Saccharomyces cerevisiae
NWGACAYWWH
DWWRTGTCWN		 PBM
Zhu et al.(2009)
Cup9		 (Direct) (Direct)
CUP9
M07488_2.00		 Saccharomyces cerevisiae
TGACAYAWW
WWTRTGTCA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0288.1		 (Direct) (Direct)
CUP9
M08576_2.00		 Saccharomyces cerevisiae
TGACAYAWW
WWTRTGTCA		 Misc
DeBoer et al.(2011)
YPL177C_480		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TOS8
M02192_2.00 		Saccharomyces cerevisiae
NNNTKACGTMW
WKACGTMANNN		 PBM
Weirauch et al.(2014)
pTH5696 		0.804 0.800
TOS8
M00057_2.00 		Saccharomyces cerevisiae
NNNCRYGNNN
NNNCRYGNNN		 PBM
Badis et al.(2008)
TOS8_2100 		0.804 0.800
TOS8
M07486_2.00 		Saccharomyces cerevisiae
NWTGACAB
VTGTCAWN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0408.1 		0.804 0.800
TOS8
M08574_2.00 		Saccharomyces cerevisiae
NWTGACAB
VTGTCAWN		 Misc
DeBoer et al.(2011)
YGL096W_494 		0.804 0.800
CAGL0H02959g
M02060_2.00 		Candida glabrata
NDTDACRBNN
NNVYGTHAHN		 PBM
Weirauch et al.(2014)
pTH6455 		0.642 0.800
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00059_2.00 Homeodomain 163 220
M01553_2.00 Homeodomain 163 220

DNA Binding Domains

Protein ID Domain From To Sequence
YPL177C Homeodomain 163 220

Links

Other Homeodomain family TFs
Other Saccharomyces cerevisiae TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30128.m009035 Ricinus communis 30128.m009035 I 0.000
Aquca_021_00051 Aquilegia coerulea Aquca_021_00051 I 0.000
NAC041 Arabidopsis thaliana AT2G33480 I 0.000
NAC083 Arabidopsis thaliana AT5G13180 D 0.000
Bo4g043670 Brassica oleracea Bo4g043670 I 0.000
Bo4g181990 Brassica oleracea Bo4g181990 I 0.000
Bostr.23794s0753 Boechera stricta Bostr.23794s0753 I 0.000
Bostr.2902s0053 Boechera stricta Bostr.2902s0053 I 0.000
Bra021856 Brassica rapa Bra021856 I 0.000
Cagra.0301s0034 Capsella grandiflora Cagra.0301s0034 N 0.000
Cagra.0596s0010 Capsella grandiflora Cagra.0596s0010 I 0.000
Carubv10002548m.g Capsella rubella Carubv10002548m.g I 0.000
Carubv10023833m.g Capsella rubella Carubv10023833m.g N 0.000
cassava1138.valid.m1 Manihot esculenta cassava1138.valid.m1 I 0.000
cassava12891.valid.m1 Manihot esculenta cassava12891.valid.m1 I 0.000
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I 0.000
Ciclev10032547m.g Citrus clementina Ciclev10032547m.g I 0.000
Cla001517 Citrullus lanatus Cla001517 I 0.000
Cucsa.349370 Cucumis sativus Cucsa.349370 I 0.000
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I 0.000
ANAC041 Arabidopsis lyrata fgenesh2_kg.4__1354__AT2G33480.1 I 0.000
GLYMA08G47520 Glycine max GLYMA08G47520 I 0.000
GLYMA18G53954 Glycine max GLYMA18G53954 I 0.000
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I 0.000
Gorai.012G125500 Gossypium raimondii Gorai.012G125500 I 0.000
Lus10001809.g Linum usitatissimum Lus10001809.g I 0.000
Lus10002581.g Linum usitatissimum Lus10002581.g I 0.000
MDP0000126517 Malus domestica MDP0000126517 I 0.000
MDP0000130123 Malus domestica MDP0000130123 I 0.000
orange1.1g030727m.g Citrus sinensis orange1.1g030727m.g I 0.000
PK12461.1 Cannabis sativa PK12461.1 I 0.000
Pm007070 Prunus mume Pm007070 I 0.000
POPTR_0001s13380 Populus trichocarpa POPTR_0001s13380 I 0.000
POPTR_0003s16490 Populus trichocarpa POPTR_0003s16490 I 0.000
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I 0.000
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I 0.000
SapurV1A.0453s0210 Salix purpurea SapurV1A.0453s0210 I 0.000
ANAC083 Arabidopsis lyrata scaffold_601328.1 I 0.000
TCM_008477 Theobroma cacao TCM_008477 I 0.000
Thhalv10017152m.g Eutrema salsugineum Thhalv10017152m.g I 0.000
ANAC083 Vitis vinifera VIT_01s0146g00280 I 0.000