Alligator_sinensis_CCG001365.1 (Alligator sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Alligator_sinensis_CCG001365.1 T225154_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.751 0.500
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.751 0.500
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.751 0.500
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.751 0.500
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.751 0.500
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.751 0.500
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.751 0.500
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.751 0.500
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.751 0.500
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.413
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001365.1 Homeodomain 61 106

Links

Other Homeodomain family TFs
Other Alligator sinensis TFs

1227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PISMIDRAFT_10103 Pisolithus microcarpus PISMIDRAFT_10103 N 0.000
PISMIDRAFT_10373 Pisolithus microcarpus PISMIDRAFT_10373 N 0.000
PISMIDRAFT_12285 Pisolithus microcarpus PISMIDRAFT_12285 N 0.000
PISMIDRAFT_12864 Pisolithus microcarpus PISMIDRAFT_12864 N 0.000
PISMIDRAFT_13224 Pisolithus microcarpus PISMIDRAFT_13224 N 0.000
PISMIDRAFT_14290 Pisolithus microcarpus PISMIDRAFT_14290 N 0.000
PISMIDRAFT_15228 Pisolithus microcarpus PISMIDRAFT_15228 N 0.000
PISMIDRAFT_15999 Pisolithus microcarpus PISMIDRAFT_15999 N 0.000
PISMIDRAFT_16695 Pisolithus microcarpus PISMIDRAFT_16695 N 0.000
PISMIDRAFT_17242 Pisolithus microcarpus PISMIDRAFT_17242 N 0.000
PISMIDRAFT_17421 Pisolithus microcarpus PISMIDRAFT_17421 N 0.000
PISMIDRAFT_18376 Pisolithus microcarpus PISMIDRAFT_18376 N 0.000
PISMIDRAFT_18990 Pisolithus microcarpus PISMIDRAFT_18990 N 0.000
PISMIDRAFT_19250 Pisolithus microcarpus PISMIDRAFT_19250 N 0.000
PISMIDRAFT_19573 Pisolithus microcarpus PISMIDRAFT_19573 N 0.000
PISMIDRAFT_19675 Pisolithus microcarpus PISMIDRAFT_19675 N 0.000
PISMIDRAFT_20118 Pisolithus microcarpus PISMIDRAFT_20118 N 0.000
PISMIDRAFT_20426 Pisolithus microcarpus PISMIDRAFT_20426 N 0.000