CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Alligator_sinensis_CCG007467.1 *(Alligator sinensis)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	Alligator_sinensis_CCG007467.1	T225198_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Barhl2 M00460_2.00	Mus musculus	NTAAWNRNN	NNYNWTTAN	PBM Berger et al.(2008) Barhl2_3868	0.696	1.000
BARHL2 M03157_2.00	Homo sapiens	NNTAAWYGNN	NNCRWTTANN	SELEX Jolma et al.(2013) BARHL2_1	0.696	1.000
BARHL2 M03158_2.00	Homo sapiens	NNTAAWBGNN	NNCVWTTANN	SELEX Jolma et al.(2013) BARHL2_2	0.696	1.000
BARHL2 M03159_2.00	Homo sapiens	TAAWYGNNNNTAAWYR	YRWTTANNNNCRWTTA	SELEX Jolma et al.(2013) BARHL2_3	0.696	1.000
BARHL2 M03160_2.00	Homo sapiens	NNTAAWYGNH	DNCRWTTANN	SELEX Jolma et al.(2013) BARHL2_4	0.696	1.000
BARHL2 M03161_2.00	Homo sapiens	NNTAAWYGNN	NNCRWTTANN	SELEX Jolma et al.(2013) BARHL2_5	0.696	1.000
BARHL2 M03162_2.00	Homo sapiens	TAAWYGNYNHTAAWYG	CRWTTADNRNCRWTTA	SELEX Jolma et al.(2013) BARHL2_6	0.696	1.000
BARHL2 M05164_2.00	Homo sapiens	HTAAAYGNY	RNCRTTTAD	SELEX Yin et al.(2017) BARHL2_eDBD_HT-SELEX_1	0.696	1.000
BARHL2 M05165_2.00	Homo sapiens	NTAAWTGNB	VNCAWTTAN	SELEX Yin et al.(2017) BARHL2_eDBD_HT-SELEX_2	0.696	1.000
BARHL2 M05167_2.00	Homo sapiens	NTAAWYGN	NCRWTTAN	SELEX Yin et al.(2017) BARHL2_FL_HT-SELEX_1	0.696	1.000
BARHL2 M05168_2.00	Homo sapiens	NTAAWYGN	NCRWTTAN	SELEX Yin et al.(2017) BARHL2_FL_HT-SELEX_2	0.696	1.000
BARHL2 M05166_2.00	Homo sapiens	NTAAWTGNB	VNCAWTTAN	SELEX Yin et al.(2017) BARHL2_eDBD_Methyl-HT-SELEX	0.696	1.000
BARHL2 M05169_2.00	Homo sapiens	NTAAWTGN	NCAWTTAN	SELEX Yin et al.(2017) BARHL2_FL_Methyl-HT-SELEX	0.696	1.000
ENSTNIG00000006040 M02106_2.00	Tetraodon nigroviridis	NNNBTAAWHRBNN	NNVYDWTTAVNNN	PBM Weirauch et al.(2014) pTH6503	0.688	0.808
Barhl1 M00433_2.00	Mus musculus	NTAAWNRNN	NNYNWTTAN	PBM Berger et al.(2008) Barhl1_2590	0.682	0.923
Barhl1 M03258_2.00	Mus musculus	NNTAAWYGNH	DNCRWTTANN	SELEX Jolma et al.(2013) Barhl1_1	0.682	0.923
Barhl1 M03259_2.00	Mus musculus	NNTAADNRNN	NNYNHTTANN	SELEX Jolma et al.(2013) Barhl1_2	0.682	0.923
Barhl1 M03260_2.00	Mus musculus	TAAWYGNYNNTAAWYG	CRWTTANNRNCRWTTA	SELEX Jolma et al.(2013) Barhl1_3	0.682	0.923
BARHL1 M05091_2.00	Homo sapiens	NTAAWYGN	NCRWTTAN	SELEX Yin et al.(2017) BARHL1_eDBD_HT-SELEX_1	0.682	0.923
BARHL1 M05092_2.00	Homo sapiens	NTAADBGN	NCVHTTAN	SELEX Yin et al.(2017) BARHL1_eDBD_HT-SELEX_2	0.682	0.923
BARHL1 M05093_2.00	Homo sapiens	NTAADKGN	NCMHTTAN	SELEX Yin et al.(2017) BARHL1_eDBD_Methyl-HT-SELEX	0.682	0.923
B-H2 M03810_2.00	Drosophila melanogaster	VNTAAAYGNH	DNCRTTTANB	SELEX Nitta et al.(2015) B-H2_1	0.681	0.808
B-H2 M03811_2.00	Drosophila melanogaster	SNTAADBGN	NCVHTTANS	SELEX Nitta et al.(2015) B-H2_2	0.681	0.808
B-H2 M06503_2.00	Drosophila melanogaster	WTAATTG	CAATTAW	B1H Mathelier et al.(2014) MA0169.1	0.681	0.808
B-H1 M03829_2.00	Drosophila melanogaster	VNTAAWYGNN	NNCRWTTANB	SELEX Nitta et al.(2015) B-H1_1	0.681	0.769
B-H1 M03830_2.00	Drosophila melanogaster	SNTAADBGN	NCVHTTANS	SELEX Nitta et al.(2015) B-H1_2	0.681	0.769
B-H1 M06512_2.00	Drosophila melanogaster	HTAAWYG	CRWTTAD	B1H Mathelier et al.(2014) MA0168.1	0.681	0.769
Bsx M00516_2.00	Mus musculus	NTAAYBDNN	NNHVRTTAN	PBM Berger et al.(2008) Bsx_3483	0.625	0.654
bsh M02113_2.00	Drosophila melanogaster	NNTAAYBDNN	NNHVRTTANN	PBM Weirauch et al.(2014) pTH6569	0.625	0.654
BSX M03235_2.00	Homo sapiens	NTAATBRN	NYVATTAN	SELEX Jolma et al.(2013) BSX_1	0.625	0.654
bsh M03786_2.00	Drosophila melanogaster	TAATYTAATTA	TAATTARATTA	SELEX Nitta et al.(2015) bsh_1	0.625	0.654
bsh M03787_2.00	Drosophila melanogaster	TAATTRVWTAATKR	YMATTAWBYAATTA	SELEX Nitta et al.(2015) bsh_2	0.625	0.654
bsh M03788_2.00	Drosophila melanogaster	NTAATBRN	NYVATTAN	SELEX Nitta et al.(2015) bsh_3	0.625	0.654
BSX M05377_2.00	Homo sapiens	NTAAYGHB	VDCRTTAN	SELEX Yin et al.(2017) BSX_eDBD_HT-SELEX_1	0.625	0.654
BSX M05378_2.00	Homo sapiens	BTAATBRV	BYVATTAV	SELEX Yin et al.(2017) BSX_eDBD_HT-SELEX_2	0.625	0.654
bsh M06483_2.00	Drosophila melanogaster	YTAATBR	YVATTAR	B1H Mathelier et al.(2014) MA0214.1	0.625	0.654
bsh M06231_2.00	Drosophila melanogaster	HYTAATBRV	BYVATTARD	B1H Zhu et al.(2011) Bsh_Cell_FBgn0000529	0.625	0.654
bsh M06232_2.00	Drosophila melanogaster	NTAATKR	YMATTAN	B1H Zhu et al.(2011) Bsh_SOLEXA_FBgn0000529	0.625	0.654
BSX M05379_2.00	Homo sapiens	NTAAYGHB	VDCRTTAN	SELEX Yin et al.(2017) BSX_eDBD_Methyl-HT-SELEX_1	0.625	0.654
BSX M05380_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) BSX_eDBD_Methyl-HT-SELEX_2	0.625	0.654
CG11085 M03857_2.00	Drosophila melanogaster	BTAAWYGN	NCRWTTAV	SELEX Nitta et al.(2015) CG11085_1	0.608	0.673
CG11085 M03858_2.00	Drosophila melanogaster	NTAAWCGN	NCGWTTAN	SELEX Nitta et al.(2015) CG11085_2	0.608	0.673
CG11085 M06532_2.00	Drosophila melanogaster	TTAATDG	CHATTAA	B1H Mathelier et al.(2014) MA0171.1	0.608	0.673
CG11085 M06339_2.00	Drosophila melanogaster	NTTAATDGV	BCHATTAAN	B1H Zhu et al.(2011) CG11085_Cell_FBgn0030408	0.608	0.673
CG11085 M06340_2.00	Drosophila melanogaster	NHTAAWBRNN	NNYVWTTADN	B1H Zhu et al.(2011) CG11085_SOLEXA_FBgn0030408	0.608	0.673
btn M03832_2.00	Drosophila melanogaster	NNTAATKANB	VNTMATTANN	SELEX Nitta et al.(2015) btn_1	0.603	0.558
btn M03833_2.00	Drosophila melanogaster	VNTAATKABN	NVTMATTANB	SELEX Nitta et al.(2015) btn_2	0.603	0.558
btn M06515_2.00	Drosophila melanogaster	DTAATKA	TMATTAH	B1H Mathelier et al.(2014) MA0215.1	0.603	0.558
btn M06307_2.00	Drosophila melanogaster	NDTAATKA	TMATTAHN	B1H Zhu et al.(2011) Btn_Cell_FBgn0014949	0.603	0.558
btn M06308_2.00	Drosophila melanogaster	HTAATKA	TMATTAD	B1H Zhu et al.(2011) Btn_SOLEXA_FBgn0014949	0.603	0.558
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Alligator_sinensis_CCG007467.1	Homeodomain	213	264	RKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRR

Links
Other Homeodomain family TFs
Other *Alligator sinensis* TFs

655 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O5_04652	Cladophialophora psammophila	A1O5_04652	N	0.000
A1O7_03244	Cladophialophora yegresii	A1O7_03244	N	0.000
AB07759.1	Alternaria brassicicola	AB07759.1	N	0.000
BAUCODRAFT_153543	Baudoinia compniacensis	BAUCODRAFT_153543	N	0.000
BBA_01979	Beauveria bassiana	BBA_01979	N	0.000
AFUA_4G06120	Aspergillus fumigatus	CADAFUAG00008505	N	0.000
CADANGAG00003746	Aspergillus niger	CADANGAG00003746	N	0.000
CADAORAG00008059	Aspergillus oryzae	CADAORAG00008059	N	0.000
ATEG_06811	Aspergillus terreus	CADATEAG00006235	N	0.000
CCM_07120	Cordyceps militaris	CCM_07120	N	0.000
CHGG_04960	Chaetomium globosum	CHGG_04960	N	0.000
EPUS_00795	Endocarpon pusillum	EPUS_00795	N	0.000
EURHEDRAFT_414376	Aspergillus ruber	EURHEDRAFT_414376	N	0.000
EV44_g1013	Erysiphe necator	EV44_g1013	N	0.000
e_gw1.00609.197.1	Aspergillus carbonarius	e_gw1.00609.197.1	N	0.000
e_gw1.1.1546.1	Nectria haematococca	e_gw1.1.1546.1	N	0.000
F503_06818	Ophiostoma piceae uamh	F503_06818	N	0.000
FFUJ_01097	Fusarium fujikuroi	FFUJ_01097	N	0.000
FGRRES_00570	Fusarium graminearum	FGRRES_00570	N	0.000
FOXG_00481	Fusarium oxysporum	FOXG_00481	N	0.000
FPSE_03139	Fusarium pseudograminearum	FPSE_03139	N	0.000
FVEG_01038	Fusarium verticillioides	FVEG_01038	N	0.000
G647_05138	Cladophialophora carrionii	G647_05138	N	0.000
GMDG_00540	Pseudogymnoascus destructans	GMDG_00540	N	0.000
HCBG_02225	Histoplasma capsulatum	HCBG_02225	N	0.000
HMPREF1120_04445	Exophiala dermatitidis	HMPREF1120_04445	N	0.000
HMPREF1541_04876	Cyphellophora europaea	HMPREF1541_04876	N	0.000
M438DRAFT_283444	Aureobasidium pullulans	M438DRAFT_283444	N	0.000
MBM_05797	Marssonina brunnea	MBM_05797	N	0.000
MGG_10538	Magnaporthe oryzae	MGG_10538	N	0.000
MPH_03243	Macrophomina phaseolina	MPH_03243	N	0.000
NechaG31004	Fusarium solani	NechaG31004	N	0.000
OIDMADRAFT_103194	Oidiodendron maius	OIDMADRAFT_103194	N	0.000
PAAG_07469	Paracoccidioides sp lutzii	PAAG_07469	N	0.000
PABG_07200	Paracoccidioides brasiliensis	PABG_07200	N	0.000
Pc22g16740	Penicillium chrysogenum	Pc22g16740	N	0.000
PCH_Pc22g16740	Penicillium rubens	PCH_Pc22g16740	N	0.000
PDE_09056	Penicillium oxalicum	PDE_09056	N	0.000
PDIP_21770	Penicillium digitatum	PDIP_21770	N	0.000
PEX1_026920	Penicillium expansum	PEX1_026920	N	0.000
PITC_069800	Penicillium italicum	PITC_069800	N	0.000
PTRG_00672	Pyrenophora triticirepentis	PTRG_00672	N	0.000
PTT_18063	Pyrenophora teres	PTT_18063	N	0.000
PV04_03426	Capronia semiimmersa	PV04_03426	N	0.000
PV10_05940	Exophiala mesophila	PV10_05940	N	0.000
SBOR_7767	Sclerotinia borealis	SBOR_7767	N	0.000
SETTUDRAFT_165736	Setosphaeria turcica	SETTUDRAFT_165736	N	0.000
SS1G_01151	Sclerotinia sclerotiorum	SS1G_01151	N	0.000
U727_0043025081	Penicillium solitum	U727_0043025081	N	0.000
V499_02467	Pseudogymnoascus pannorum	V499_02467	N	0.000
VHEMI06243	Torrubiella hemipterigena	VHEMI06243	N	0.000
Z517_10604	Fonsecaea pedrosoi	Z517_10604	N	0.000
Z518_01224	Rhinocladiella mackenziei	Z518_01224	N	0.000
Z519_02478	Cladophialophora bantiana	Z519_02478	N	0.000

Alligator_sinensis_CCG007467.1 (Alligator sinensis) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

655 Related TFs

Alligator_sinensis_CCG007467.1 **(Alligator sinensis)
Homeodomain**