Alligator_sinensis_CCG019998.1 (Alligator sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Alligator_sinensis_CCG019998.1 T225288_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.706 0.488
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.706 0.488
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.706 0.488
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.680 0.366
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.680 0.366
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.680 0.366
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.680 0.366
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.680 0.366
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.680 0.366
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.680 0.366
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.680 0.366
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.680 0.366
GSX1
M03205_2.00 		Homo sapiens
NNTAATKRNN
NNYMATTANN		 SELEX
Jolma et al.(2013)
GSX1_1 		0.262 1.000
GSX1
M05271_2.00 		Homo sapiens
NYMATNRN
NYNATKRN		 SELEX
Yin et al.(2017)
GSX1_eDBD_HT-SELEX 		0.262 1.000
GSX1
M05272_2.00 		Homo sapiens
NTAAYGAB
VTCRTTAN		 SELEX
Yin et al.(2017)
GSX1_eDBD_Methyl-HT-SELEX 		0.262 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG019998.1 Homeodomain 1 41

Links

Other Homeodomain family TFs
Other Alligator sinensis TFs

1225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL012237 Aedes aegypti AAEL012237 I 0.000
AALB008732 Anopheles albimanus AALB008732 I 0.000
ACEP16358 Atta cephalotes ACEP16358 I 0.000
ACHR003925 Anopheles christyi ACHR003925 I 0.000
ACOM035641 Anopheles coluzzii ACOM035641 I 0.000
ACUA001438 Anopheles culicifacies ACUA001438 I 0.000
ACYPI005523 Acyrthosiphon pisum ACYPI005523 I 0.000
ADIR006501 Anopheles dirus ADIR006501 I 0.000
AEPI003923 Anopheles epiroticus AEPI003923 I 0.000
AFAF015236 Anopheles farauti AFAF015236 I 0.000
AFUN000621 Anopheles funestus AFUN000621 I 0.000
AGAP003177 Anopheles gambiae AGAP003177 I 0.000
Alligator_sinensis_CCG022139.1 Alligator sinensis Alligator_sinensis_CCG022139.1 I 0.000
AMAM014069 Anopheles maculatus AMAM014069 N 0.000
AMEC003172 Anopheles melas AMEC003172 I 0.000
AMEM013272 Anopheles merus AMEM013272 I 0.000
AMIN002759 Anopheles minimus AMIN002759 I 0.000
AQUA008115 Anopheles quadriannulatus AQUA008115 I 0.000
ASIS001309 Anopheles sinensis ASIS001309 I 0.000
ASTEI00681 Anopheles stephensi ASTEI00681 I 0.000
BGIBMGA004944 Bombyx mori BGIBMGA004944 I 0.000
Cflo_05278--XP_623530.1_APIME Camponotus floridanus Cflo_05278--XP_623530.1_APIME I 0.000
CLEC011217 Cimex lectularius CLEC011217 I 0.000
Cmyd_10004970 Chelonia mydas Cmyd_10004970 I 0.000
CPIJ003297 Culex quinquefasciatus CPIJ003297 I 0.000
CpipJ_CPIJ003297 Culex pipiens CpipJ_CPIJ003297 I 0.000
ENSAMEG00000003472 Ailuropoda melanoleuca ENSAMEG00000003472 I 0.000
ENSAMXG00000012675 Astyanax mexicanus ENSAMXG00000012675 I 0.000
ENSBTAP00000023939-D1 Bos grunniens ENSBTAP00000023939-D1 I 0.000
MAX Canis familiaris ENSCAFG00000016212 I 0.000
MAX Choloepus hoffmanni ENSCHOG00000006957 I 0.000
MAX Callithrix jacchus ENSCJAG00000019702 I 0.000
ENSCPOG00000010172 Cavia porcellus ENSCPOG00000010172 I 0.000
ENSCSAG00000013429 Chlorocebus sabaeus ENSCSAG00000013429 I 0.000
ENSCSAVG00000010547 Ciona savignyi ENSCSAVG00000010547 I 0.000
max Danio rerio ENSDARG00000024844 I 0.000
ENSDNOG00000034422 Dasypus novemcinctus ENSDNOG00000034422 I 0.000
MAX Equus caballus ENSECAG00000006923 I 0.000
MAX Erinaceus europaeus ENSEEUG00000003973 I 0.000
MAX Echinops telfairi ENSETEG00000002967 I 0.000
ENSFALG00000001190 Ficedula albicollis ENSFALG00000001190 I 0.000
MAX Felis catus ENSFCAG00000010347 I 0.000
MAX Homo sapiens ENSG00000125952 D 0.000
max Gasterosteus aculeatus ENSGACG00000007808 I 0.000
ENSGALG00000028248 Gallus gallus ENSGALG00000028248 I 0.000
MAX Gorilla gorilla ENSGGOG00000026047 I 0.000
ENSGMOG00000003647 Gadus morhua ENSGMOG00000003647 I 0.000
ENSLACG00000016665 Latimeria chalumnae ENSLACG00000016665 I 0.000
MAX Loxodonta africana ENSLAFG00000018437 I 0.000
MAX Meleagris gallopavo ENSMGAG00000004785 I 0.000
ENSMICG00000013124 Microcebus murinus ENSMICG00000013124 I 0.000
MAX Myotis lucifugus ENSMLUG00000004318 I 0.000
MAX Macaca mulatta ENSMMUG00000004341 I 0.000
MAX Monodelphis domestica ENSMODG00000009712 I 0.000
ENSMPUG00000006859 Mustela putorius furo ENSMPUG00000006859 I 0.000
Max Mus musculus ENSMUSG00000059436 D 0.000
ENSNLEG00000014373 Nomascus leucogenys ENSNLEG00000014373 I 0.000
MAX Ornithorhynchus anatinus ENSOANG00000005841 I 0.000
ENSOARG00000021159 Ovis aries ENSOARG00000021159 I 0.000
MAX Oryctolagus cuniculus ENSOCUG00000014439 I 0.000
ENSOGAG00000034529 Otolemur garnettii ENSOGAG00000034529 I 0.000
MAX Ochotona princeps ENSOPRG00000016245 I 0.000
MAX Oryzias latipes ENSORLG00000016817 I 0.000
ENSP00000351490 Macaca fascicularis ENSP00000351490 I 0.000
ENSPANG00000020361 Papio anubis ENSPANG00000020361 I 0.000
MAX Procavia capensis ENSPCAG00000000840 I 0.000
ENSPFOG00000013150 Poecilia formosa ENSPFOG00000013150 I 0.000
ENSPFOG00000017744 Poecilia formosa ENSPFOG00000017744 I 0.000
ENSPPYG00000005911 Pongo abelii ENSPPYG00000005911 I 0.000
ENSPSIG00000009674 Pelodiscus sinensis ENSPSIG00000009674 I 0.000
MAX Pan troglodytes ENSPTRG00000006449 I 0.000
Max Rattus norvegicus ENSRNOG00000008049 I 0.000
MAX Sorex araneus ENSSARG00000010212 I 0.000
ENSSHAG00000014285 Sarcophilus harrisii ENSSHAG00000014285 I 0.000
ENSSSCG00000002282 Sus scrofa ENSSSCG00000002282 I 0.000
ENSSTOG00000028142 Ictidomys tridecemlineatus ENSSTOG00000028142 I 0.000
MAX Tupaia belangeri ENSTBEG00000012645 I 0.000
MAX Tetraodon nigroviridis ENSTNIG00000000407 I 0.000
max Tetraodon nigroviridis ENSTNIG00000016412 I 0.000
MAX Takifugu rubripes ENSTRUG00000014760 I 0.000
max Takifugu rubripes ENSTRUG00000017815 I 0.000
ENSTSYG00000007582 Tarsius syrichta ENSTSYG00000007582 I 0.000
MAX Tursiops truncatus ENSTTRG00000002693 I 0.000
ENSXMAG00000014355 Xiphophorus maculatus ENSXMAG00000014355 I 0.000
fgenesh2_pg.scaffold_132000064 Branchiostoma floridae fgenesh2_pg.scaffold_132000064 I 0.000
GB41968 Apis mellifera GB41968 I 0.000
gw.35.272.1 Branchiostoma floridae gw.35.272.1 I 0.000
HHAL010192-PA Halyomorpha halys HHAL010192-PA I 0.000
Hsal_16014--XP_623530.1_APIME Harpegnathos saltator Hsal_16014--XP_623530.1_APIME I 0.000
ISCW013570 Ixodes scapularis ISCW013570 I 0.000
KGM_17406 Danaus plexippus KGM_17406 I 0.000
L798_15281 Zootermopsis nevadensis L798_15281 N 0.000
LCUP011850 Lucilia cuprina LCUP011850 I 0.000
LDEC015014 Leptinotarsa decemlineata LDEC015014 I 0.000
LLOJ003470 Lutzomyia longipalpis LLOJ003470 I 0.000
LotgiG133235 Lottia gigantea LotgiG133235 I 0.000
MDOA012035 Musca domestica MDOA012035 I 0.000
Myotis_brandtii_MAX_10027131 Myotis brandtii Myotis_brandtii_MAX_10027131 I 0.000
NEMVEDRAFT_v1g80696 Nematostella vectensis NEMVEDRAFT_v1g80696 I 0.000
NV15216 Nasonia vitripennis NV15216 I 0.000
Ocbimv22020257m.g Octopus bimaculoides Ocbimv22020257m.g I 0.000
Ogr08511 Ophisaurus gracilis Ogr08511 I 0.000
PHUM220200 Pediculus humanus PHUM220200 I 0.000
Pvit_16227 Pogona vitticeps Pvit_16227 I 0.000
RPRC015255 Rhodnius prolixus RPRC015255 I 0.000
Sakowv30027986m.g Saccoglossus kowalevskii Sakowv30027986m.g I 0.000
SINV12716 Solenopsis invicta SINV12716 I 0.000
SPU_022163 Strongylocentrotus purpuratus SPU_022163 I 0.000
TC009976 Tribolium castaneum TC009976 I 0.000
tetur05g05490 Tetranychus urticae tetur05g05490 I 0.000
TriadG51792 Trichoplax adhaerens TriadG51792 I 0.000
max.L Xenopus laevis XB-GENE-6252877 I 0.000
max.S Xenopus laevis XB-GENE-6255913 I 0.000
max Xenopus tropicalis XB-GENE-6258209 I 0.000
YQE_10562 Dendroctonus ponderosae YQE_10562 I 0.000