Cla001806 (Citrullus lanatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cla001806 T225568_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.838 0.667
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.562
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.438
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.438
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.438
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.438
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla001806 Homeodomain 496 546

Links

Other Homeodomain family TFs
Other Citrullus lanatus TFs

1012 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CANTEDRAFT_103057 Candida tenuis CANTEDRAFT_103057 N 0.000
CLUG_01805 Candida lusitaniae CLUG_01805 N 0.000
CLUG_01805 Clavispora lusitaniae CLUG_01805 N 0.000
DEHA2G20812g Debaryomyces hansenii DEHA2G20812g N 0.000
GNLVRS01_PISO0A02354g Millerozyma farinosa GNLVRS01_PISO0A02354g N 0.000
GNLVRS01_PISO0B02465g Millerozyma farinosa GNLVRS01_PISO0B02465g N 0.000
gwh1.2.1.1791.1 Pichia stipitis gwh1.2.1.1791.1 N 0.000
PGUG_03020 Candida guilliermondii PGUG_03020 N 0.000
PGUG_03020 Meyerozyma guilliermondii PGUG_03020 N 0.000
PICST_10913 Scheffersomyces stipitis PICST_10913 N 0.000