Gfo_R004570 (Geospiza fortis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gfo_R004570 T226180_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.808 0.543
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.808 0.543
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.808 0.543
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.808 0.543
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.808 0.543
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.808 0.543
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.808 0.543
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.808 0.543
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.808 0.543
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.722 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.722 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.722 0.413
SHOX
M02095_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 PBM
Weirauch et al.(2014)
pTH5805 		0.377 1.000
Shox2
M00439_2.00 		Mus musculus
NTAATDDN
NHHATTAN		 PBM
Berger et al.(2008)
Shox2_2641 		0.377 1.000
SHOX
M03232_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
SHOX_1 		0.377 1.000
SHOX2
M03204_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Jolma et al.(2013)
SHOX2_1 		0.377 1.000
Shox2
M03263_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Shox2_1 		0.377 1.000
SHOX
M05366_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_HT-SELEX 		0.377 1.000
Shox2
M10772_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SHOX2_05 		0.377 1.000
SHOX
M05367_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_1 		0.377 1.000
SHOX
M05368_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_2 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004570 Homeodomain 26 71

Links

Other Homeodomain family TFs
Other Geospiza fortis TFs

1240 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O3_09996 Capronia epimyces A1O3_09996 I
A1O5_08901 Cladophialophora psammophila A1O5_08901 I
A1O7_06013 Cladophialophora yegresii A1O7_06013 I
A1O9_07978 Exophiala aquamarina A1O9_07978 I
AB07784.1 Alternaria brassicicola AB07784.1 I
ACRE_056110 Acremonium chrysogenum ACRE_056110 I
AUEXF2481DRAFT_33171 Aureobasidium subglaciale AUEXF2481DRAFT_33171 I
BAUCODRAFT_190174 Baudoinia compniacensis BAUCODRAFT_190174 I
BBA_02099 Beauveria bassiana BBA_02099 I
Bcin11g02290 Botrytis cinerea Bcin11g02290 I
BDDG_01232 Blastomyces dermatitidis BDDG_01232 I
ACLA_023830 Aspergillus clavatus CADACLAG00002657 I
CADAFLAG00008215 Aspergillus flavus CADAFLAG00008215 I
AFUA_1G11800 Aspergillus fumigatus CADAFUAG00007601 I
CADANGAG00006720 Aspergillus niger CADANGAG00006720 I
ANIA_01114 Aspergillus nidulans CADANIAG00001514 I
ATEG_00373 Aspergillus terreus CADATEAG00007187 I
NFIA_013750 Neosartorya fischeri CADNFIAG00000692 I
CCM_06899 Cordyceps militaris CCM_06899 I
CFIO01_08807 Colletotrichum fioriniae CFIO01_08807 I
CH063_12530 Colletotrichum higginsianum CH063_12530 I
CHGG_00821 Chaetomium globosum CHGG_00821 I
CIMG_07010 Coccidioides immitis CIMG_07010 I
CMQ_8079 Grosmannia clavigera CMQ_8079 I
Cob_01636 Colletotrichum orbiculare Cob_01636 I
COCC4DRAFT_128615 Bipolaris maydis COCC4DRAFT_128615 I
COCCADRAFT_8201 Bipolaris zeicola COCCADRAFT_8201 I
COCMIDRAFT_34913 Bipolaris oryzae COCMIDRAFT_34913 I
COCSADRAFT_163131 Bipolaris sorokiniana COCSADRAFT_163131 I
COCVIDRAFT_25662 Bipolaris victoriae COCVIDRAFT_25662 I
CPC735_033720 Coccidioides posadasii CPC735_033720 I
CSUB01_01372 Colletotrichum sublineola CSUB01_01372 I
DOTSEDRAFT_68329 Dothistroma septosporum DOTSEDRAFT_68329 I
estExt_fgenesh1_pg.C_50693 Cryphonectria parasitica estExt_fgenesh1_pg.C_50693 I
estExt_fgenesh1_pg.C_60292 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_60292 I
estExt_fgenesh1_pg.C_chr_11274 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_11274 I
estExt_Genewise1Plus.C_12488 Mycosphaerella fijiensis estExt_Genewise1Plus.C_12488 I
EURHEDRAFT_515289 Aspergillus ruber EURHEDRAFT_515289 I
F503_02328 Ophiostoma piceae uamh F503_02328 I
fgenesh1_pg.sca_1_chr1_3_0000236 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0000236 I
fgenesh1_pm.00083_#_572 Aspergillus carbonarius fgenesh1_pm.00083_#_572 I
FGRRES_01139 Fusarium graminearum FGRRES_01139 I
FOXG_00250 Fusarium oxysporum FOXG_00250 I
FPSE_01025 Fusarium pseudograminearum FPSE_01025 I
FVEG_01266 Fusarium verticillioides FVEG_01266 I
G647_06523 Cladophialophora carrionii G647_06523 I
GGTG_10163 Gaeumannomyces graminis GGTG_10163 I
GLRG_03970 Colletotrichum graminicola GLRG_03970 I
GMDG_03925 Pseudogymnoascus destructans GMDG_03925 I
HMPREF1120_03828 Exophiala dermatitidis HMPREF1120_03828 I
HMPREF1541_01524 Cyphellophora europaea HMPREF1541_01524 I
HMPREF1624_05225 Sporothrix schenckii HMPREF1624_05225 I
LEMA_P051770.1 Leptosphaeria maculans LEMA_P051770.1 I
M437DRAFT_59197 Aureobasidium melanogenum M437DRAFT_59197 I
M438DRAFT_398194 Aureobasidium pullulans M438DRAFT_398194 I
MAC_05305 Metarhizium acridum MAC_05305 I
MAJ_02265 Metarhizium majus MAJ_02265 I
MAM_06778 Metarhizium album MAM_06778 I
MBM_05753 Marssonina brunnea MBM_05753 I
MGG_00190 Magnaporthe oryzae MGG_00190 I
MPH_03506 Macrophomina phaseolina MPH_03506 I
MYCFIDRAFT_209944 Pseudocercospora fijiensis MYCFIDRAFT_209944 I
Mycgr3G107535 Zymoseptoria tritici Mycgr3G107535 I
MYCTH_2136960 Myceliophthora thermophila MYCTH_2136960 I
NCU03077 Neurospora crassa NCU03077 D
NechaG74625 Fusarium solani NechaG74625 I
NEUTE1DRAFT_91395 Neurospora tetrasperma NEUTE1DRAFT_91395 I
OCS_06751 Ophiocordyceps sinensis OCS_06751 I
OIDMADRAFT_120781 Oidiodendron maius OIDMADRAFT_120781 I
PAAG_07715 Paracoccidioides sp lutzii PAAG_07715 I
PABG_00408 Paracoccidioides brasiliensis PABG_00408 I
Pc13g11100 Penicillium chrysogenum Pc13g11100 I
PCH_Pc13g11100 Penicillium rubens PCH_Pc13g11100 I
PDE_00349 Penicillium oxalicum PDE_00349 I
PDIP_28360 Penicillium digitatum PDIP_28360 I
PEX1_036250 Penicillium expansum PEX1_036250 I
PFICI_01479 Pestalotiopsis fici PFICI_01479 I
PITC_060100 Penicillium italicum PITC_060100 I
PMAA_043170 Talaromyces marneffei PMAA_043170 I
PMAA_043170 Penicillium marneffei PMAA_043170 I
PODANS_1_11860 Podospora anserina PODANS_1_11860 I
PTT_17167 Pyrenophora teres PTT_17167 I
PV04_06397 Capronia semiimmersa PV04_06397 I
PV05_08455 Exophiala xenobiotica PV05_08455 I
PV06_02480 Exophiala oligosperma PV06_02480 I
PV07_03516 Cladophialophora immunda PV07_03516 I
PV08_02622 Exophiala spinifera PV08_02622 I
PV09_02511 Verruconis gallopava PV09_02511 I
PV10_08190 Exophiala mesophila PV10_08190 I
PV11_07448 Exophiala sideris PV11_07448 I
PVAR5_3751 Byssochlamys spectabilis PVAR5_3751 I
S40285_00857 Stachybotrys chlorohalonata S40285_00857 I
S40288_03500 Stachybotrys chartarum S40288_03500 I
SAPIO_CDS3083 Scedosporium apiospermum SAPIO_CDS3083 I
SBOR_4877 Sclerotinia borealis SBOR_4877 I
SEPMUDRAFT_129980 Sphaerulina musiva SEPMUDRAFT_129980 I
SETTUDRAFT_156846 Setosphaeria turcica SETTUDRAFT_156846 I
SMAC_02806 Sordaria macrospora SMAC_02806 I
SNOG_06810 Stagonospora nodorum SNOG_06810 I
SNOG_06810 Phaeosphaeria nodorum SNOG_06810 I
SPBR_04826 Sporothrix brasiliensis SPBR_04826 I
SS1G_01557 Sclerotinia sclerotiorum SS1G_01557 I
THITE_2143564 Thielavia terrestris THITE_2143564 I
TRIATDRAFT_198898 Trichoderma atroviride TRIATDRAFT_198898 I
TRIREDRAFT_112532 Trichoderma reesei TRIREDRAFT_112532 I
TRIVIDRAFT_142610 Trichoderma virens TRIVIDRAFT_142610 I
TSTA_076950 Talaromyces stipitatus TSTA_076950 I
U727_00434280111 Penicillium solitum U727_00434280111 I
UCREL1_11189 Eutypa lata UCREL1_11189 I
UREG_05851 Uncinocarpus reesii UREG_05851 I
UV8b_5026 Ustilaginoidea virens UV8b_5026 I
V499_06127 Pseudogymnoascus pannorum V499_06127 I
VDAG_03217 Verticillium dahliae VDAG_03217 I
VHEMI06472 Torrubiella hemipterigena VHEMI06472 I
W97_00561 Coniosporium apollinis W97_00561 I
X797_003719 Metarhizium robertsii X797_003719 I
Z517_01173 Fonsecaea pedrosoi Z517_01173 I
Z518_05389 Rhinocladiella mackenziei Z518_05389 I
Z519_03752 Cladophialophora bantiana Z519_03752 I