CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Q9GP48_9TURB *(Discocelis tigrina)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	Q9GP48_9TURB	T226951_2.00	HughesLab (2013-Jun-13)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Q9GP48_9TURB M02217_2.00	Discocelis tigrina	DTAATTAB	VTAATTAH	PBM Weirauch et al.(2014) pTH6515	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CDX1 M10761_2.00	Gallus gallus	BDBWAAK	MTTWVHV	Transfac Matys et al.(2006) V$CDXA_01	0.653	0.737
CDX1 M10762_2.00	Gallus gallus	WWWWMYR	YRKWAWW	Transfac Matys et al.(2006) V$CDXA_02	0.653	0.737
Cdx1 M00427_2.00	Mus musculus	NWWATDRNN	NNYHATWWN	PBM Berger et al.(2008) Cdx1_2245	0.641	0.737
CDX1 M03115_2.00	Homo sapiens	NTTTATKRB	VYMATAAAN	SELEX Jolma et al.(2013) CDX1_1	0.641	0.737
CDX1 M05018_2.00	Homo sapiens	VKTTTATKRCN	NGYMATAAAMB	SELEX Yin et al.(2017) CDX1_eDBD_HT-SELEX	0.641	0.737
CDX1 M09140_2.00	Homo sapiens	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_HUMAN.H11MO.0.C	0.641	0.737
Cdx1 M09186_2.00	Mus musculus	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_MOUSE.H11MO.0.C	0.641	0.737
CDX1 M10670_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q4	0.641	0.737
CDX1 M10671_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q5	0.641	0.737
CDX1 M05019_2.00	Homo sapiens	NGTCGTAAAWB	VWTTTACGACN	SELEX Yin et al.(2017) CDX1_eDBD_Methyl-HT-SELEX	0.641	0.737
Cdx2 M00447_2.00	Mus musculus	NWWAYDRNN	NNYHRTWWN	PBM Berger et al.(2008) Cdx2_4272	0.641	0.719
Cdx2 M09193_2.00	Mus musculus	BTTTATKRCYBY	RVRGYMATAAAV	Misc Kulakovskiy et al.(2013) CDX2_MOUSE.H11MO.0.A	0.641	0.719
Cdx2 M09572_2.00	Mus musculus	NTTTTATKRC	GYMATAAAAN	Misc Heinz et al.(2010) mES-Cdx2_GSE14586	0.641	0.719
CDX2 M03196_2.00	Homo sapiens	KTTTATKRB	VYMATAAAM	SELEX Jolma et al.(2013) CDX2_1	0.641	0.702
CDX2 M05248_2.00	Homo sapiens	NDTWAYRRYN	NRYYRTWAHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_1	0.641	0.702
CDX2 M05249_2.00	Homo sapiens	NDWWATKRB	VYMATWWHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_2	0.641	0.702
CDX2 M08131_2.00	Homo sapiens	YTTTATKRCHB	VDGYMATAAAR	ChIP-seq Mathelier et al.(2014) MA0465.1	0.641	0.702
CDX2 M09152_2.00	Homo sapiens	DTTBATKGCHNB	VNDGCMATVAAH	Misc Kulakovskiy et al.(2013) CDX2_HUMAN.H11MO.0.A	0.641	0.702
CDX2 M10723_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_01	0.641	0.702
CDX2 M10724_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_02	0.641	0.702
CDX2 M10725_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5	0.641	0.702
CDX2 M10726_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q6	0.641	0.702
CDX2 M05250_2.00	Homo sapiens	NRTCGTAWHBNN	NNVDWTACGAYN	SELEX Yin et al.(2017) CDX2_eDBD_Methyl-HT-SELEX	0.641	0.702
cad M03780_2.00	Drosophila melanogaster	NKTTTATKRCHB	VDGYMATAAAMN	SELEX Nitta et al.(2015) cad_1	0.637	0.719
cad M03781_2.00	Drosophila melanogaster	NDTTTATKRCHN	NDGYMATAAAHN	SELEX Nitta et al.(2015) cad_2	0.637	0.719
cad M03782_2.00	Drosophila melanogaster	NDTTTATKRCNB	VNGYMATAAAHN	SELEX Nitta et al.(2015) cad_3	0.637	0.719
cad M03783_2.00	Drosophila melanogaster	NNTTTAYGRYNN	NNRYCRTAAANN	SELEX Nitta et al.(2015) cad_4	0.637	0.719
cad M06223_2.00	Drosophila melanogaster	HTTWATTR	YAATWAAD	B1H Zhu et al.(2011) Cad_Cell_FBgn0000251	0.637	0.719
cad M06224_2.00	Drosophila melanogaster	RBYVDAAMV	BKTTHBRVY	B1H Zhu et al.(2011) cad_FlyReg_FBgn0000251	0.637	0.719
cad M06225_2.00	Drosophila melanogaster	NTTWATKR	YMATWAAN	B1H Zhu et al.(2011) Cad_SOLEXA_FBgn0000251	0.637	0.719
cad M08420_2.00	Drosophila melanogaster	DTTTTATKRYY	RRYMATAAAAH	ChIP-chip Mathelier et al.(2014) MA0216.2	0.637	0.719
cad M09580_2.00	Drosophila melanogaster	DTTTAYGRYN	NRYCRTAAAH	Misc Heinz et al.(2010) Drosophila-Embryos_modEncode	0.637	0.719
cad M09674_2.00	Drosophila melanogaster	HTTTATKRBY	RVYMATAAAD	Misc Kulakovskiy et al.(2009) cad	0.637	0.719
cad M10783_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$CAD_Q6	0.637	0.719
Q70LF3_ARTSF M02211_2.00	Artemia franciscana	BTAATTAB	VTAATTAV	PBM Weirauch et al.(2014) pTH5553	0.630	0.719
Ubx M00558_2.00	Drosophila melanogaster	NWWAYDDNN	NNHHRTWWN	PBM Busser et al.(2012a) Ubx	0.615	0.632
Ubx M03804_2.00	Drosophila melanogaster	NTAATKRH	DYMATTAN	SELEX Nitta et al.(2015) Ubx_1	0.615	0.632
Ubx M06499_2.00	Drosophila melanogaster	NTTAATKR	YMATTAAN	B1H Mathelier et al.(2014) MA0094.2	0.615	0.632
Ubx M06273_2.00	Drosophila melanogaster	NTTAATKR	YMATTAAN	B1H Zhu et al.(2011) Ubx_Cell_FBgn0003944	0.615	0.632
Ubx M06274_2.00	Drosophila melanogaster	TAATKD	HMATTA	B1H Zhu et al.(2011) Ubx_FlyReg_FBgn0003944	0.615	0.632
Ubx M06275_2.00	Drosophila melanogaster	NTTWATKR	YMATWAAN	B1H Zhu et al.(2011) Ubx_SOLEXA_FBgn0003944	0.615	0.632
Ubx M09680_2.00	Drosophila melanogaster	TTAATKR	YMATTAA	Misc Kulakovskiy et al.(2009) Ubx	0.615	0.632
Ubx M10788_2.00	Drosophila melanogaster	NNVNNNNTAATKRNBHNND	HNNDVNYMATTANNNNBNN	Transfac Matys et al.(2006) I$UBX_01	0.615	0.632
ceh-19 M02180_2.00	Caenorhabditis elegans	NTWAWDRNN	NNYHWTWAN	PBM Weirauch et al.(2014) pTH5661	0.615	0.456
CG34031 M02126_2.00	Drosophila melanogaster	NNNDNNRN	NYNNHNNN	PBM Weirauch et al.(2014) pTH6447	0.611	0.474
CG34031 M06548_2.00	Drosophila melanogaster	TTAATWG	CWATTAA	B1H Mathelier et al.(2014) MA0444.1	0.611	0.474
CG34031 M06372_2.00	Drosophila melanogaster	BTTAATWG	CWATTAAV	B1H Zhu et al.(2011) CG34031_Cell_FBgn0054031	0.611	0.474
CG34031 M06373_2.00	Drosophila melanogaster	NTTAATDR	YHATTAAN	B1H Zhu et al.(2011) CG34031_SOLEXA_FBgn0054031	0.611	0.474
Q8I9J5_9BILA M02214_2.00	Spadella cephaloptera	NVTAWTWABN	NVTWAWTABN	PBM Weirauch et al.(2014) pTH6164	0.610	0.526
Cdx4 M09197_2.00	Mus musculus	WGATTTATDRBH	DVYHATAAATCW	Misc Kulakovskiy et al.(2013) CDX4_MOUSE.H11MO.0.A	0.609	0.702
CDX4 M05129_2.00	Homo sapiens	VKTTTATKRCH	DGYMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_HT-SELEX	0.609	0.684
CDX4 M05130_2.00	Homo sapiens	BGTCGTAAAHN	NDTTTACGACV	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_1	0.609	0.684
CDX4 M05131_2.00	Homo sapiens	VKTTTATKGCN	NGCMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_2	0.609	0.684
Hoxb6 M00381_2.00	Mus musculus	NNDHNNN	NNNDHNN	PBM Berger et al.(2008) Hoxb6_3428	0.606	0.596
Hoxa7 M00476_2.00	Mus musculus	NNWAYNDNN	NNHNRTWNN	PBM Berger et al.(2008) Hoxa7_2668	0.606	0.596
Hoxa7 M00477_2.00	Mus musculus	NYHHYNNNN	NNNNRDDRN	PBM Berger et al.(2008) Hoxa7_3750	0.606	0.596
Hoxa6 M00494_2.00	Mus musculus	NWWATKRNN	NNYMATWWN	PBM Berger et al.(2008) Hoxa6_1040	0.606	0.596
abd-A M03770_2.00	Drosophila melanogaster	NNTAATKRCN	NGYMATTANN	SELEX Nitta et al.(2015) abd-A_1	0.606	0.596
abd-A M03771_2.00	Drosophila melanogaster	NNTAATKRCN	NGYMATTANN	SELEX Nitta et al.(2015) abd-A_2	0.606	0.596
HOXA6 M04974_2.00	Homo sapiens	NNTAATKRVN	NBYMATTANN	SELEX Yin et al.(2017) HOXA6_eDBD_HT-SELEX	0.606	0.596
HOXA7 M05069_2.00	Homo sapiens	NTAATKRV	BYMATTAN	SELEX Yin et al.(2017) HOXA7_eDBD_HT-SELEX	0.606	0.596
HOXB6 M04999_2.00	Homo sapiens	NTAATKRY	RYMATTAN	SELEX Yin et al.(2017) HOXB6_eDBD_HT-SELEX	0.606	0.596
abd-A M06475_2.00	Drosophila melanogaster	TTAATKA	TMATTAA	B1H Mathelier et al.(2014) MA0206.1	0.606	0.596
Antp M06549_2.00	Drosophila melanogaster	TTAATKA	TMATTAA	B1H Mathelier et al.(2014) MA0166.1	0.606	0.596
abd-A M06210_2.00	Drosophila melanogaster	WTWATKDM	KHMATWAW	B1H Zhu et al.(2011) Abd-A_FlyReg_FBgn0000014	0.606	0.596
Antp M06374_2.00	Drosophila melanogaster	YTTAATKA	TMATTAAR	B1H Zhu et al.(2011) Antp_Cell_FBgn0000095	0.606	0.596
Antp M06375_2.00	Drosophila melanogaster	WTAATW	AATTAW	B1H Zhu et al.(2011) Antp_FlyReg_FBgn0000095	0.606	0.596
Antp M06376_2.00	Drosophila melanogaster	NHTAATKR	YMATTADN	B1H Zhu et al.(2011) Antp_SOLEXA_FBgn0000095	0.606	0.596
abd-A M09671_2.00	Drosophila melanogaster	HTAATKRH	DYMATTAD	Misc Kulakovskiy et al.(2009) abd-A	0.606	0.596
Antp M09682_2.00	Drosophila melanogaster	TYTTWATKA	TMATWAARA	Misc Kulakovskiy et al.(2009) Antp	0.606	0.596
abd-A M10778_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$ABDA_Q6	0.606	0.596
Antp M10789_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$ANTP_Q6_01	0.606	0.596
HOXA7 M10679_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA7_01	0.606	0.596
HOXA6 M04975_2.00	Homo sapiens	NNTAATKRBN	NVYMATTANN	SELEX Yin et al.(2017) HOXA6_eDBD_Methyl-HT-SELEX_1	0.606	0.596
HOXA6 M04976_2.00	Homo sapiens	NTAAYGRY	RYCRTTAN	SELEX Yin et al.(2017) HOXA6_eDBD_Methyl-HT-SELEX_2	0.606	0.596
HOXA7 M05070_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) HOXA7_eDBD_Methyl-HT-SELEX_1	0.606	0.596
HOXA7 M05071_2.00	Homo sapiens	NTAAYGAY	RTCRTTAN	SELEX Yin et al.(2017) HOXA7_eDBD_Methyl-HT-SELEX_2	0.606	0.596
HOXB6 M05000_2.00	Homo sapiens	HTAAYGAY	RTCRTTAD	SELEX Yin et al.(2017) HOXB6_eDBD_Methyl-HT-SELEX_1	0.606	0.596
HOXB6 M05001_2.00	Homo sapiens	NTWATKRB	VYMATWAN	SELEX Yin et al.(2017) HOXB6_eDBD_Methyl-HT-SELEX_2	0.606	0.596
Hoxc6 M00392_2.00	Mus musculus	TTAATTAB	VTAATTAA	PBM Berger et al.(2008) Hoxc6_3954	0.606	0.579
ftz M03795_2.00	Drosophila melanogaster	WTAATTRC	GYAATTAW	SELEX Nitta et al.(2015) ftz_1	0.606	0.561
ftz M06488_2.00	Drosophila melanogaster	TTAATKA	TMATTAA	B1H Mathelier et al.(2014) MA0225.1	0.606	0.561
ftz M06247_2.00	Drosophila melanogaster	VTTAATKA	TMATTAAB	B1H Zhu et al.(2011) Ftz_Cell_FBgn0001077	0.606	0.561
ftz M06248_2.00	Drosophila melanogaster	TAATKRNH	DNYMATTA	B1H Zhu et al.(2011) ftz_FlyReg_FBgn0001077	0.606	0.561
ftz M06249_2.00	Drosophila melanogaster	BTAATKA	TMATTAV	B1H Zhu et al.(2011) Ftz_SOLEXA_FBgn0001077	0.606	0.561
ftz M09679_2.00	Drosophila melanogaster	YTAATKRNN	NNYMATTAR	Misc Kulakovskiy et al.(2009) ftz	0.606	0.561
ftz M10787_2.00	Drosophila melanogaster	CTTAATTRBHBB	VVDVYAATTAAG	Transfac Matys et al.(2006) I$FTZ_01	0.606	0.561
Hoxc8 M00391_2.00	Mus musculus	NNDNYNNNN	NNNNRNHNN	PBM Berger et al.(2008) Hoxc8_3429	0.605	0.579
Hoxb8 M00517_2.00	Mus musculus	NWWAYNDNN	NNHNRTWWN	PBM Berger et al.(2008) Hoxb8_3780	0.605	0.579
HOXD8 M03221_2.00	Homo sapiens	VHWAATKWDN	NHWMATTWDB	SELEX Jolma et al.(2013) HOXD8_1	0.605	0.579
HOXB8 M05048_2.00	Homo sapiens	NTAATKRM	KYMATTAN	SELEX Yin et al.(2017) HOXB8_eDBD_HT-SELEX	0.605	0.579
HOXC8 M04912_2.00	Homo sapiens	NYAATTRN	NYAATTRN	SELEX Yin et al.(2017) HOXC8_FL_HT-SELEX	0.605	0.579
HOXD8 M05310_2.00	Homo sapiens	BTAATKRY	RYMATTAV	SELEX Yin et al.(2017) HOXD8_eDBD_HT-SELEX	0.605	0.579
HOXB8 M09141_2.00	Homo sapiens	BMATHAATCAA	TTGATTDATKV	Misc Kulakovskiy et al.(2013) HXB8_HUMAN.H11MO.0.C	0.605	0.579
Hoxb8 M09214_2.00	Mus musculus	BMATHAATCAA	TTGATTDATKV	Misc Kulakovskiy et al.(2013) HXB8_MOUSE.H11MO.0.C	0.605	0.579
HOXC8 M10636_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXC8_Q3	0.605	0.579
HOXB8 M05049_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) HOXB8_eDBD_Methyl-HT-SELEX_1	0.605	0.579
HOXB8 M05050_2.00	Homo sapiens	NTAAYGAY	RTCRTTAN	SELEX Yin et al.(2017) HOXB8_eDBD_Methyl-HT-SELEX_2	0.605	0.579
HOXC8 M04913_2.00	Homo sapiens	NYMATKRN	NYMATKRN	SELEX Yin et al.(2017) HOXC8_FL_Methyl-HT-SELEX_1	0.605	0.579
HOXC8 M04914_2.00	Homo sapiens	NTWAYGRY	RYCRTWAN	SELEX Yin et al.(2017) HOXC8_FL_Methyl-HT-SELEX_2	0.605	0.579
HOXD8 M05311_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) HOXD8_eDBD_Methyl-HT-SELEX_1	0.605	0.579
HOXD8 M05312_2.00	Homo sapiens	NTWAYGRY	RYCRTWAN	SELEX Yin et al.(2017) HOXD8_eDBD_Methyl-HT-SELEX_2	0.605	0.579
pal-1 M02183_2.00	Caenorhabditis elegans	GYAATWAA	TTWATTRC	PBM Weirauch et al.(2014) pTH6016	0.599	0.614
CBG00023 M02062_2.00	Caenorhabditis briggsae	NWWATKDNNN	NNNHMATWWN	PBM Weirauch et al.(2014) pTH5778	0.599	0.456
egl-5 M09581_2.00	Caenorhabditis elegans	DWTTWATGGS	SCCATWAAWH	Misc Heinz et al.(2010) cElegans-L3-EGL5_modEncode	0.599	0.456
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M02217_2.00	Homeodomain	1	57	DKYRQVYTEQQKLELEKEFLTQKYVNARRKSEMARALQLTERQVKIWFQNRRAKERK

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Q9GP48_9TURB	Homeodomain	163	219	DKYRQVYTEQQKLELEKEFLTQKYVNARRKSEMARALQLTERQVKIWFQNRRAKERK

Links
Other Homeodomain family TFs
Other *Discocelis tigrina* TFs

1000 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ZSCAN9	Bos taurus	ENSBTAG00000040168	I	0.000
ZSCAN9	Callithrix jacchus	ENSCJAG00000018658	I	0.000
ZSCAN9	Equus caballus	ENSECAG00000015075	I	0.000
ZSCAN9	Homo sapiens	ENSG00000137185	D	0.000
ZSCAN9	Gorilla gorilla	ENSGGOG00000000688	I	0.000
ZSCAN9	Microcebus murinus	ENSMICG00000010443	I	0.000
ZSCAN9	Macaca mulatta	ENSMMUG00000002537	I	0.000
ENSNLEG00000004504	Nomascus leucogenys	ENSNLEG00000004504	I	0.000
ENSP00000404074	Macaca fascicularis	ENSP00000404074	I	0.000
ENSPANG00000013432	Papio anubis	ENSPANG00000013432	I	0.000
ENSPPYG00000029879	Pongo abelii	ENSPPYG00000029879	I	0.000
ZSCAN9	Sus scrofa	ENSSSCG00000001203	I	0.000
ENSTSYG00000006203	Tarsius syrichta	ENSTSYG00000006203	I	0.000
ZSCAN9	Tursiops truncatus	ENSTTRG00000013203	I	0.000

Q9GP48_9TURB (Discocelis tigrina) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

Experimental Constructs

DNA Binding Domains

Links

1000 Related TFs

Q9GP48_9TURB **(Discocelis tigrina)
Homeodomain**