cassava12117.valid.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava12117.valid.m1 T227028_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.862 0.982
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.862 0.982
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.857 0.893
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.857 0.893
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.857 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava12117.valid.m1 Homeodomain 17 76

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BDDG_06653 Blastomyces dermatitidis BDDG_06653 N
ACLA_015100 Aspergillus clavatus CADACLAG00001340 N
ANIA_00094 Aspergillus nidulans CADANIAG00002656 N
CIMG_09218 Coccidioides immitis CIMG_09218 N
Cob_00662 Colletotrichum orbiculare Cob_00662 N
CORT_0C03980 Candida orthopsilosis CORT_0C03980 N
CPAG_00585 Candida parapsilosis CPAG_00585 N
CPC735_016330 Coccidioides posadasii CPC735_016330 N
CTRG_02481 Candida tropicalis CTRG_02481 N
estExt_fgenesh1_pg.C_80373 Cryphonectria parasitica estExt_fgenesh1_pg.C_80373 N
estExt_fgenesh1_pg.C_chr_1.20163 Pichia stipitis estExt_fgenesh1_pg.C_chr_1.20163 N
EURHEDRAFT_413664 Aspergillus ruber EURHEDRAFT_413664 N
EURHEDRAFT_515094 Aspergillus ruber EURHEDRAFT_515094 N
F503_06049 Ophiostoma piceae uamh F503_06049 I
GMDG_04760 Pseudogymnoascus destructans GMDG_04760 I
H101_02488 Trichophyton interdigitale H101_02488 N
M437DRAFT_57903 Aureobasidium melanogenum M437DRAFT_57903 N
M438DRAFT_314995 Aureobasidium pullulans M438DRAFT_314995 N
MCYG_05147 Microsporum canis MCYG_05147 N
MCYG_05147 Arthroderma otae MCYG_05147 N
MGYG_09115 Microsporum gypseum MGYG_09115 N
PAAG_02454 Paracoccidioides sp lutzii PAAG_02454 N
PABG_04947 Paracoccidioides brasiliensis PABG_04947 N
PICST_66618 Scheffersomyces stipitis PICST_66618 N
TESG_03832 Trichophyton tonsurans TESG_03832 N
UREG_05062 Uncinocarpus reesii UREG_05062 N
V499_00582 Pseudogymnoascus pannorum V499_00582 N