cassava41616.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava41616.m1 T227132_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.702 0.645
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.698 0.645
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.698 0.645
HOS66
M02156_2.00 		Oryza sativa
NNNNDHNN
NNDHNNNN		 PBM
Weirauch et al.(2014)
pTH8332 		0.685 0.645
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.675 0.516
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.675 0.516
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.675 0.516
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.675 0.516
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.619 0.839
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.613 0.484
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.606 0.516
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava41616.m1 Homeodomain 1 31

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

1235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_079170 Acremonium chrysogenum ACRE_079170 N
BBA_04448 Beauveria bassiana BBA_04448 N
NFIA_003270 Neosartorya fischeri CADNFIAG00000089 N
CFIO01_10935 Colletotrichum fioriniae CFIO01_10935 N
CH063_07408 Colletotrichum higginsianum CH063_07408 N
CSUB01_03837 Colletotrichum sublineola CSUB01_03837 N
EURHEDRAFT_72344 Aspergillus ruber EURHEDRAFT_72344 N
FFUJ_01364 Fusarium fujikuroi FFUJ_01364 N
fgenesh1_pm.sca_1_chr1_3_0000112 Nectria haematococca fgenesh1_pm.sca_1_chr1_3_0000112 N
FGRRES_01172 Fusarium graminearum FGRRES_01172 N
FOXG_00219 Fusarium oxysporum FOXG_00219 N
FPSE_02603 Fusarium pseudograminearum FPSE_02603 N
FVEG_01299 Fusarium verticillioides FVEG_01299 N
GLRG_04054 Colletotrichum graminicola GLRG_04054 N
MAC_04201 Metarhizium acridum MAC_04201 N
MAJ_02155 Metarhizium majus MAJ_02155 N
MANI_024672 Metarhizium anisopliae MANI_024672 N
MGU_04822 Metarhizium guizhouense MGU_04822 N
NechaG89979 Fusarium solani NechaG89979 N
OCS_04252 Ophiocordyceps sinensis OCS_04252 N
S40285_00886 Stachybotrys chlorohalonata S40285_00886 N
S40288_08147 Stachybotrys chartarum S40288_08147 N
TRIATDRAFT_221642 Trichoderma atroviride TRIATDRAFT_221642 N
TRIREDRAFT_78895 Trichoderma reesei TRIREDRAFT_78895 N
TRIVIDRAFT_35417 Trichoderma virens TRIVIDRAFT_35417 N
UV8b_5696 Ustilaginoidea virens UV8b_5696 N
VHEMI06418 Torrubiella hemipterigena VHEMI06418 N
X797_003689 Metarhizium robertsii X797_003689 N