e_gw1.41.8.1 (Physcomitrella patens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 e_gw1.41.8.1 T227259_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.661 0.544
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.661 0.544
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.661 0.544
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.661 0.526
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.661 0.526
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.649 0.544
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.631 0.561
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.631 0.561
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.631 0.561
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.629 0.491
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.629 0.491
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.41.8.1 Homeodomain 55 111

Links

Other Homeodomain family TFs
Other Physcomitrella patens TFs

687 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_kg.C_30200002 Phytophthora capsici estExt_fgenesh1_kg.C_30200002 N 0.000
F443_05590 Phytophthora parasitica F443_05590 N 0.000
fgenesh_masked-piw_contig_88-abinit-gene-0.43 Pythium iwayamai fgenesh_masked-piw_contig_88-abinit-gene-0.43 N 0.000
fgenesh_scip_prom.46568.10829 Phytophthora kernoviae fgenesh_scip_prom.46568.10829 N 0.000
HpaG808968 Hyaloperonospora arabidopsidis HpaG808968 N 0.000
maker-pag1_scaffold_161-snap-gene-0.10 Pythium aphanidermatum maker-pag1_scaffold_161-snap-gene-0.10 N 0.000
maker-par_contig_1598-fgenesh-gene-0.1 Pythium arrhenomanes maker-par_contig_1598-fgenesh-gene-0.1 N 0.000
maker-pir_contig_219-fgenesh-gene-0.10 Pythium irregulare maker-pir_contig_219-fgenesh-gene-0.10 N 0.000
maker-pve_contig_855-fgenesh-gene-0.1 Pythium vexans maker-pve_contig_855-fgenesh-gene-0.1 N 0.000
Phyra84742 Phytophthora ramorum Phyra84742 N 0.000
Physo127334 Phytophthora sojae Physo127334 N 0.000
PITG_09816 Phytophthora infestans PITG_09816 N 0.000
PYU1_G001927 Pythium ultimum PYU1_G001927 N 0.000
SPRG_03788 Saprolegnia parasitica SPRG_03788 N 0.000