e_gw.52.107.1 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 e_gw.52.107.1 T227305_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.763 0.833
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.763 0.833
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.763 0.833
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.763 0.833
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.763 0.833
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.751 0.778
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.751 0.778
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.751 0.778
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.751 0.778
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.729 0.778
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.729 0.778
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.729 0.778
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.729 0.778
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.729 0.778
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.696 0.704
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.696 0.704
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.696 0.704
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.696 0.704
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.696 0.704
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.696 0.704
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.696 0.704
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.696 0.704
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.696 0.704
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.696 0.704
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.696 0.704
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.696 0.704
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.696 0.704
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.696 0.704
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.696 0.704
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.696 0.704
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.696 0.704
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.696 0.704
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.696 0.685
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.696 0.685
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.696 0.685
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.696 0.685
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.696 0.685
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.696 0.685
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.696 0.685
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.696 0.685
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.621 0.519
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw.52.107.1 Homeodomain 117 170

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

535 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB008493 Anopheles albimanus AALB008493 N
AARA011013 Anopheles arabiensis AARA011013 N
ACEP16054 Atta cephalotes ACEP16054 N
ACEP16128 Atta cephalotes ACEP16128 N
ACEP18777 Atta cephalotes ACEP18777 N
ACHR009374 Anopheles christyi ACHR009374 N
ACUA008906 Anopheles culicifacies ACUA008906 N
ACUA018702 Anopheles culicifacies ACUA018702 N
ACUA028082 Anopheles culicifacies ACUA028082 N
AEPI004511 Anopheles epiroticus AEPI004511 N
AFUN001004 Anopheles funestus AFUN001004 N
AFUN010567 Anopheles funestus AFUN010567 N
AGAP011712 Anopheles gambiae AGAP011712 N
Alligator_sinensis_CCG010046.1 Alligator sinensis Alligator_sinensis_CCG010046.1 N
AMEM014364 Anopheles merus AMEM014364 N
AMIN000991 Anopheles minimus AMIN000991 N
ANCCAN_04327 Ancylostoma caninum ANCCAN_04327 N
ANCCEY_00583 Ancylostoma ceylanicum ANCCEY_00583 N
ANCDUO_17822 Ancylostoma duodenale ANCDUO_17822 N
ANCDUO_27140 Ancylostoma duodenale ANCDUO_27140 N
AQUA000257 Anopheles quadriannulatus AQUA000257 N
AQUA010449 Anopheles quadriannulatus AQUA010449 N
ASTEI10438 Anopheles stephensi ASTEI10438 N
BGIBMGA003174 Bombyx mori BGIBMGA003174 N
BGIBMGA006719 Bombyx mori BGIBMGA006719 N
BGIBMGA012898 Bombyx mori BGIBMGA012898 N
BGLB011455 Biomphalaria glabrata BGLB011455 N
Bm3498 Brugia malayi Bm3498 I
Cflo_02417--XP_001121225.1_APIME Camponotus floridanus Cflo_02417--XP_001121225.1_APIME N
DICVIV_10715 Dictyocaulus viviparus DICVIV_10715 N
DME_0000818901 Dracunculus medinensis DME_0000818901 N
ECANG7_07880 Echinococcus canadensis ECANG7_07880 N
ECPE_0000395601 Echinostoma caproni ECPE_0000395601 N
TBX15 Bos taurus ENSBTAG00000007767 I
TBX10 Canis familiaris ENSCAFG00000011264 I
ENSCJAG00000000826 Callithrix jacchus ENSCJAG00000000826 N
ENSCSAVG00000000786 Ciona savignyi ENSCSAVG00000000786 I
ENSETEG00000007920 Echinops telfairi ENSETEG00000007920 N
ENSOANG00000020395 Ornithorhynchus anatinus ENSOANG00000020395 I
ENSOANG00000029773 Ornithorhynchus anatinus ENSOANG00000029773 I
TBX5 Vicugna pacos ENSVPAG00000009445 I
ENSXMAG00000002873 Xiphophorus maculatus ENSXMAG00000002873 N
ENSXMAG00000005990 Xiphophorus maculatus ENSXMAG00000005990 N
GF19461 Drosophila ananassae FBgn0096470 N
GG18707 Drosophila erecta FBgn0110916 N
GD16691 Drosophila simulans FBgn0188280 N
GPUH_0000843501 Gongylonema pulchrum GPUH_0000843501 N
GPUH_0002190501 Gongylonema pulchrum GPUH_0002190501 N
HCOI01136500 Haemonchus contortus HCOI01136500 N
HHAL010563-PA Halyomorpha halys HHAL010563-PA N
HMEL004264 Heliconius melpomene HMEL004264 N
Hsal_04126--XP_001122560.1_APIME Harpegnathos saltator Hsal_04126--XP_001122560.1_APIME I
Hsal_09269--XP_394607.3_APIME Harpegnathos saltator Hsal_09269--XP_394607.3_APIME N
ISCW019287 Ixodes scapularis ISCW019287 N
KGM_15500 Danaus plexippus KGM_15500 N
L798_01365 Zootermopsis nevadensis L798_01365 N
LCUP008640 Lucilia cuprina LCUP008640 N
LDEC010813 Leptinotarsa decemlineata LDEC010813 N
NBR_0000542501 Nippostrongylus brasiliensis NBR_0000542501 N
NBR_0001177301 Nippostrongylus brasiliensis NBR_0001177301 N
NBR_0002182001 Nippostrongylus brasiliensis NBR_0002182001 N
nOo.2.0.1.g12879 Onchocerca ochengi nOo.2.0.1.g12879 N
OESDEN_02780 Oesophagostomum dentatum OESDEN_02780 N
OESDEN_07954 Oesophagostomum dentatum OESDEN_07954 N
OFLC_0001184101 Onchocerca flexuosa OFLC_0001184101 N
PPA14512 Pristionchus pacificus PPA14512 N
PPAI002123 Phlebotomus papatasi PPAI002123 N
PPAI007567 Phlebotomus papatasi PPAI007567 N
PXEA_0000704401 Protopolystoma xenopodis PXEA_0000704401 N
PXEA_0001803801 Protopolystoma xenopodis PXEA_0001803801 N
SINV16738 Solenopsis invicta SINV16738 N
SINV17750 Solenopsis invicta SINV17750 I
SINV20004 Solenopsis invicta SINV20004 N
Smp_156650 Schistosoma mansoni Smp_156650 N
SMTD_0001100101 Schistosoma mattheei SMTD_0001100101 N
SMUV_0000075501 Syphacia muris SMUV_0000075501 N
SNAPOd2T00025688001 Oikopleura dioica SNAPOd2T00025688001 N
SPER_0002063901 Spirometra erinaceieuropaei SPER_0002063901 N
SPER_0003769001 Spirometra erinaceieuropaei SPER_0003769001 N
SPER_0003779701 Spirometra erinaceieuropaei SPER_0003779701 N
Tal_R010698 Tyto alba Tal_R010698 N
TRE_0001207201 Trichobilharzia regenti TRE_0001207201 N
YQE_06268 Dendroctonus ponderosae YQE_06268 N
YQE_10906 Dendroctonus ponderosae YQE_10906 N