estExt_gwp_gw1.C_670048 (Physcomitrella patens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 estExt_gwp_gw1.C_670048 T227443_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.856 0.875
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.856 0.875
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.856 0.875
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.852 0.893
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.852 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp_gw1.C_670048 Homeodomain 5 64

Links

Other Homeodomain family TFs
Other Physcomitrella patens TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF454 Bos taurus ENSBTAG00000004262 I
ZNF454 Canis familiaris ENSCAFG00000031168 I
ZNF454 Choloepus hoffmanni ENSCHOG00000002770 I
ZNF454 Callithrix jacchus ENSCJAG00000018857 I
ENSCSAG00000008562 Chlorocebus sabaeus ENSCSAG00000008562 I
ZNF454 Equus caballus ENSECAG00000005115 I
ZNF454 Erinaceus europaeus ENSEEUG00000007684 I
ZNF454 Felis catus ENSFCAG00000021971 I
ZNF454 Homo sapiens ENSG00000178187 D
ZNF454 Gorilla gorilla ENSGGOG00000022508 I
ZNF454 Myotis lucifugus ENSMLUG00000002894 I
ENSMMUG00000008980 Macaca mulatta ENSMMUG00000008980 I
ENSMPUG00000000725 Mustela putorius furo ENSMPUG00000000725 I
Zfp454 Mus musculus ENSMUSG00000048728 I
ENSNLEG00000001430 Nomascus leucogenys ENSNLEG00000001430 I
ENSOARG00000004411 Ovis aries ENSOARG00000004411 I
ZNF454 Oryctolagus cuniculus ENSOCUG00000029119 I
ZNF454 Ochotona princeps ENSOPRG00000009035 I
ENSP00000326249 Macaca fascicularis ENSP00000326249 I
ENSPANG00000009509 Papio anubis ENSPANG00000009509 I
ZNF454 Pan troglodytes ENSPTRG00000017611 I
ZNF454 Pteropus vampyrus ENSPVAG00000007676 I
Znf454 Rattus norvegicus ENSRNOG00000022971 I
ZNF454 Sus scrofa ENSSSCG00000027351 I
ZNF454 Tupaia belangeri ENSTBEG00000000346 I
ZNF454 Tursiops truncatus ENSTTRG00000012880 I