gw1.224.39.1 (Physcomitrella patens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gw1.224.39.1 T227616_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX13
M02049_2.00 		Arabidopsis thaliana
YTGATTGA
TCAATCAR		 PBM
Weirauch et al.(2014)
pTH6461 		0.844 0.719
WOX13
M00866_2.00 		Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN		 PBM
Franco-Zorrilla et al.(2014)
WOX13 		0.844 0.719
GRMZM2G038252
M02137_2.00 		Zea mays
HTRATTGV
BCAATYAD		 PBM
Weirauch et al.(2014)
pTH6141 		0.831 0.789
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.224.39.1 Homeodomain 61 122

Links

Other Homeodomain family TFs
Other Physcomitrella patens TFs

345 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
1703276C Xenopus laevis 1703276C N
1703276D Xenopus laevis 1703276D I
AAA49750 Xenopus laevis AAA49750 N
AALB002897 Anopheles albimanus AALB002897 N
AALB002908 Anopheles albimanus AALB002908 N
Aan_R001812 Calypte anna Aan_R001812 N
Aan_R007134 Calypte anna Aan_R007134 I
AARA003138 Anopheles arabiensis AARA003138 N
AARA011782 Anopheles arabiensis AARA011782 I
AATE009299 Anopheles atroparvus AATE009299 I
AATE015217 Anopheles atroparvus AATE015217 N
ACAC_0000093601 Angiostrongylus cantonensis ACAC_0000093601 N
ACAC_0000671101 Angiostrongylus cantonensis ACAC_0000671101 N
ACEP24283 Atta cephalotes ACEP24283 N
ACHR008505 Anopheles christyi ACHR008505 N
ACOC_0000215101 Angiostrongylus costaricensis ACOC_0000215101 N
ACOC_0000334101 Angiostrongylus costaricensis ACOC_0000334101 N
ACOC_0000865601 Angiostrongylus costaricensis ACOC_0000865601 N
ACOM035026 Anopheles coluzzii ACOM035026 N
ACOM036085 Anopheles coluzzii ACOM036085 N
ACUA005475 Anopheles culicifacies ACUA005475 N
ACUA020431 Anopheles culicifacies ACUA020431 N
AEPI004568 Anopheles epiroticus AEPI004568 N
AEPI010384 Anopheles epiroticus AEPI010384 N
AEPI010666 Anopheles epiroticus AEPI010666 N
AFAF004701 Anopheles farauti AFAF004701 N
Afo_R002867 Aptenodytes forsteri Afo_R002867 I
Afo_R002868 Aptenodytes forsteri Afo_R002868 I
Afo_R012244 Aptenodytes forsteri Afo_R012244 N
Alligator_sinensis_CCG001661.1 Alligator sinensis Alligator_sinensis_CCG001661.1 I
Alligator_sinensis_CCG004967.1 Alligator sinensis Alligator_sinensis_CCG004967.1 N
Alligator_sinensis_CCG010660.1 Alligator sinensis Alligator_sinensis_CCG010660.1 N
AMAM004568 Anopheles maculatus AMAM004568 N
AMAM018190 Anopheles maculatus AMAM018190 I
AMAM021430 Anopheles maculatus AMAM021430 N
AMEM007254 Anopheles merus AMEM007254 N
AMIN006246 Anopheles minimus AMIN006246 N
ANCCAN_04049 Ancylostoma caninum ANCCAN_04049 I
ANCCAN_11756 Ancylostoma caninum ANCCAN_11756 N
ANCCAN_12383 Ancylostoma caninum ANCCAN_12383 N
ANCCAN_18983 Ancylostoma caninum ANCCAN_18983 N
ANCCAN_19464 Ancylostoma caninum ANCCAN_19464 N
ANCCAN_23849 Ancylostoma caninum ANCCAN_23849 N
ANCCAN_25804 Ancylostoma caninum ANCCAN_25804 N
ANCCAN_27026 Ancylostoma caninum ANCCAN_27026 N
ANCCEY_01003 Ancylostoma ceylanicum ANCCEY_01003 I
ANCCEY_10591 Ancylostoma ceylanicum ANCCEY_10591 N
ANCCEY_10891 Ancylostoma ceylanicum ANCCEY_10891 N
ANCDUO_02794 Ancylostoma duodenale ANCDUO_02794 N
ANCDUO_04800 Ancylostoma duodenale ANCDUO_04800 N
ANCDUO_09320 Ancylostoma duodenale ANCDUO_09320 N
ANCDUO_14985 Ancylostoma duodenale ANCDUO_14985 N
ANCDUO_19178 Ancylostoma duodenale ANCDUO_19178 N
ANCDUO_26697 Ancylostoma duodenale ANCDUO_26697 N
AQUA010391 Anopheles quadriannulatus AQUA010391 I
AQUA011152 Anopheles quadriannulatus AQUA011152 N
AQUA015309 Anopheles quadriannulatus AQUA015309 N
ASIM_0000060401 Anisakis simplex ASIM_0000060401 N
ASIM_0000175201 Anisakis simplex ASIM_0000175201 N
ASIM_0000357501 Anisakis simplex ASIM_0000357501 N
ASIM_0001450801 Anisakis simplex ASIM_0001450801 N
ASIM_0001810001 Anisakis simplex ASIM_0001810001 N
ASIS018446 Anopheles sinensis ASIS018446 N
ASIS021849 Anopheles sinensis ASIS021849 N
augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0 N
A_05714 Schistosoma haematobium A_05714 N
BGIBMGA003265 Bombyx mori BGIBMGA003265 N
BGIBMGA006390 Bombyx mori BGIBMGA006390 I
BGIBMGA006480 Bombyx mori BGIBMGA006480 N
BGIBMGA008456 Bombyx mori BGIBMGA008456 I
BGLB001080 Biomphalaria glabrata BGLB001080 N
BGLB001550 Biomphalaria glabrata BGLB001550 N
BGLB006778 Biomphalaria glabrata BGLB006778 N
BGLB007714 Biomphalaria glabrata BGLB007714 N
BGLB007719 Biomphalaria glabrata BGLB007719 N
BGLB007768 Biomphalaria glabrata BGLB007768 N
BGLB009053 Biomphalaria glabrata BGLB009053 N
BGLB011885 Biomphalaria glabrata BGLB011885 N
BGLB012524 Biomphalaria glabrata BGLB012524 N
Brh_R008378 Buceros rhinoceros Brh_R008378 I
BTMF_0000546301 Brugia timori BTMF_0000546301 N
CAA41845 Xenopus laevis CAA41845 N
CAA41846 Xenopus laevis CAA41846 I
CapteG142082 Capitella teleta CapteG142082 N
CBG05223 Caenorhabditis briggsae CBG05223 N
Cflo_00859--XP_394119.2_APIME Camponotus floridanus Cflo_00859--XP_394119.2_APIME N
Cflo_12078--XP_001122113.1_APIME Camponotus floridanus Cflo_12078--XP_001122113.1_APIME I
CGI_10026625 Crassostrea gigas CGI_10026625 N
CGOC_0001035201 Cylicostephanus goldi CGOC_0001035201 N
CLEC004114 Cimex lectularius CLEC004114 N
Cmyd_10005403 Chelonia mydas Cmyd_10005403 I
Cmyd_10007343 Chelonia mydas Cmyd_10007343 N
Cmyd_10012338 Chelonia mydas Cmyd_10012338 N
CPIJ004950 Culex quinquefasciatus CPIJ004950 N
CPIJ015449 Culex quinquefasciatus CPIJ015449 N
CPIJ016098 Culex quinquefasciatus CPIJ016098 N
CpipJ_CPIJ004950 Culex pipiens CpipJ_CPIJ004950 N
CpipJ_CPIJ015449 Culex pipiens CpipJ_CPIJ015449 N
CpipJ_CPIJ016098 Culex pipiens CpipJ_CPIJ016098 N
csin107937 Clonorchis sinensis csin107937 N
DAPPUDRAFT_50954 Daphnia pulex DAPPUDRAFT_50954 N
DICVIV_09128 Dictyocaulus viviparus DICVIV_09128 N
DILT_0000613101 Diphyllobothrium latum DILT_0000613101 N
DME_0000044501 Dracunculus medinensis DME_0000044501 N
DME_0000045101 Dracunculus medinensis DME_0000045101 N
ECPE_0000850801 Echinostoma caproni ECPE_0000850801 N
ENSACAG00000007695 Anolis carolinensis ENSACAG00000007695 N
ENSAMEG00000020243 Ailuropoda melanoleuca ENSAMEG00000020243 N
ENSAMXG00000008007 Astyanax mexicanus ENSAMXG00000008007 I
ENSBTAP00000023806-D2 Bos grunniens ENSBTAP00000023806-D2 N
HOXB3 Canis familiaris ENSCAFG00000028513 I
ENSCING00000011826 Ciona intestinalis ENSCING00000011826 N
ARX Callithrix jacchus ENSCJAG00000004737 N
ENSCSAG00000006765 Chlorocebus sabaeus ENSCSAG00000006765 N
hesx1 Danio rerio ENSDARG00000054509 N
ENSECAG00000008369 Equus caballus ENSECAG00000008369 I
ENSECAG00000017919 Equus caballus ENSECAG00000017919 I
ENSFALG00000010250 Ficedula albicollis ENSFALG00000010250 N
HMX2 Felis catus ENSFCAG00000023440 N
ENSFCAG00000025984 Felis catus ENSFCAG00000025984 N
MEOX1 Homo sapiens ENSG00000005102 D
BARX1 Homo sapiens ENSG00000131668 D
hoxc12a Gasterosteus aculeatus ENSGACG00000009391 N
DLX1 Gallus gallus ENSGALG00000018439 I
ENSGMOG00000017864 Gadus morhua ENSGMOG00000017864 N
VAX1 Loxodonta africana ENSLAFG00000018107 N
HOXB3 Meleagris gallopavo ENSMGAG00000002541 N
ENSMGAG00000009298 Meleagris gallopavo ENSMGAG00000009298 N
ENSMGAG00000010685 Meleagris gallopavo ENSMGAG00000010685 I
EVX1 Meleagris gallopavo ENSMGAG00000010703 N
RAX2 Microcebus murinus ENSMICG00000014768 I
DBX1 Myotis lucifugus ENSMLUG00000004774 N
HOXB3 Myotis lucifugus ENSMLUG00000008445 N
ENSMLUG00000022220 Myotis lucifugus ENSMLUG00000022220 N
ENSMMUG00000020182 Macaca mulatta ENSMMUG00000020182 N
ENSMMUP00000026575 Macaca fascicularis ENSMMUP00000026575 N
BARX2 Ornithorhynchus anatinus ENSOANG00000000573 N
ENSOANG00000007774 Ornithorhynchus anatinus ENSOANG00000007774 N
BSX Ornithorhynchus anatinus ENSOANG00000010303 N
ENSOCUG00000013528 Oryctolagus cuniculus ENSOCUG00000013528 I
GBX2 Oryzias latipes ENSORLG00000001376 I
ENSP00000417207-D1 Bos grunniens ENSP00000417207-D1 N
ENSPMAG00000008178 Petromyzon marinus ENSPMAG00000008178 N
ENSPMAG00000008834 Petromyzon marinus ENSPMAG00000008834 N
ENSPPYG00000029706 Pongo abelii ENSPPYG00000029706 N
ENSPSIG00000004928 Pelodiscus sinensis ENSPSIG00000004928 N
ENSPSIG00000017365 Pelodiscus sinensis ENSPSIG00000017365 N
HOXB2 Pan troglodytes ENSPTRG00000009352 I
LOC100912608 Rattus norvegicus ENSRNOG00000050252 I
ENSSHAG00000002450 Sarcophilus harrisii ENSSHAG00000002450 N
ENSSHAG00000011988 Sarcophilus harrisii ENSSHAG00000011988 I
ENSTGUG00000000339 Taeniopygia guttata ENSTGUG00000000339 N
ENSTGUG00000011379 Taeniopygia guttata ENSTGUG00000011379 I
ENSTSYG00000005123 Tarsius syrichta ENSTSYG00000005123 N
ENSVPAG00000005792 Vicugna pacos ENSVPAG00000005792 N
ENSVPAG00000010060 Vicugna pacos ENSVPAG00000010060 I
ENSXMAG00000013191 Xiphophorus maculatus ENSXMAG00000013191 N
EVEC_0001263401 Enterobius vermicularis EVEC_0001263401 N
e_gw.11.656.1 Branchiostoma floridae e_gw.11.656.1 N
GH13586 Drosophila grimshawi FBgn0121062 N
GI23625 Drosophila mojavensis FBgn0146351 N
GM17434 Drosophila sechellia FBgn0172344 I
GLYMA08G09430 Glycine max GLYMA08G09430 N
GPLIN_000138000 Globodera pallida GPLIN_000138000 N
GPLIN_000838600 Globodera pallida GPLIN_000838600 N
GPUH_0000701601 Gongylonema pulchrum GPUH_0000701601 N
GPUH_0001146601 Gongylonema pulchrum GPUH_0001146601 N
GPUH_0002138601 Gongylonema pulchrum GPUH_0002138601 N
Hba_10731 Heterorhabditis bacteriophora Hba_10731 N
Hba_17357 Heterorhabditis bacteriophora Hba_17357 N
HCOI02012200 Haemonchus contortus HCOI02012200 N
HelroG147207 Helobdella robusta HelroG147207 N
HelroG148863 Helobdella robusta HelroG148863 N
HHAL004742-PA Halyomorpha halys HHAL004742-PA N
HHAL004985-PA Halyomorpha halys HHAL004985-PA N
HHAL009617-PA Halyomorpha halys HHAL009617-PA N
HMEL002756 Heliconius melpomene HMEL002756 N
HMEL003744 Heliconius melpomene HMEL003744 N
HMEL010247 Heliconius melpomene HMEL010247 N
HMEL016138 Heliconius melpomene HMEL016138 N
HNAJ_0000607701 Hymenolepis nana HNAJ_0000607701 N
HNAJ_0000873601 Hymenolepis nana HNAJ_0000873601 N
HPBE_0002029201 Heligmosomoides bakeri HPBE_0002029201 N
HPBE_0002330201 Heligmosomoides bakeri HPBE_0002330201 N
HPBE_0002651601 Heligmosomoides bakeri HPBE_0002651601 N
Hsal_06516--XP_001122113.1_APIME Harpegnathos saltator Hsal_06516--XP_001122113.1_APIME I
ISCW001024 Ixodes scapularis ISCW001024 N
KGM_13123 Danaus plexippus KGM_13123 N
KGM_15359 Danaus plexippus KGM_15359 N
KGM_21794 Danaus plexippus KGM_21794 I
L596_g18563 Steinernema carpocapsae L596_g18563 N
L798_03158 Zootermopsis nevadensis L798_03158 N
L798_10070 Zootermopsis nevadensis L798_10070 N
LCUP010920 Lucilia cuprina LCUP010920 N
LCUP015732 Lucilia cuprina LCUP015732 N
LDEC001874 Leptinotarsa decemlineata LDEC001874 N
LDEC016573 Leptinotarsa decemlineata LDEC016573 N
LLOJ003466 Lutzomyia longipalpis LLOJ003466 N
LLOJ004702 Lutzomyia longipalpis LLOJ004702 N
maker-nMf.1.1.scaf05303-snap-gene-0.8 Meloidogyne floridensis maker-nMf.1.1.scaf05303-snap-gene-0.8 N
MCINX006168 Melitaea cinxia MCINX006168 N
MESCA011418 Megaselia scalaris MESCA011418 N
MhA1_Contig121.frz3.gene75 Meloidogyne hapla MhA1_Contig121.frz3.gene75 N
Minc02159 Meloidogyne incognita Minc02159 N
Minc16530 Meloidogyne incognita Minc16530 N
Myotis_brandtii_Barx2_10007775 Myotis brandtii Myotis_brandtii_Barx2_10007775 N
NBR_0000086301 Nippostrongylus brasiliensis NBR_0000086301 N
NBR_0002203301 Nippostrongylus brasiliensis NBR_0002203301 N
nDi.2.2.2.g10376 Dirofilaria immitis nDi.2.2.2.g10376 N
nDi.2.2.2.g10679 Dirofilaria immitis nDi.2.2.2.g10679 I
nDi.2.2.2.g11810 Dirofilaria immitis nDi.2.2.2.g11810 I
NECAME_04746 Necator americanus NECAME_04746 N
NECAME_11765 Necator americanus NECAME_11765 N
NECAME_15451 Necator americanus NECAME_15451 N
NECAME_16917 Necator americanus NECAME_16917 N
NEMVEDRAFT_v1g101680 Nematostella vectensis NEMVEDRAFT_v1g101680 N
NEMVEDRAFT_v1g128275 Nematostella vectensis NEMVEDRAFT_v1g128275 N
NEMVEDRAFT_v1g128296 Nematostella vectensis NEMVEDRAFT_v1g128296 N
NEMVEDRAFT_v1g150519 Nematostella vectensis NEMVEDRAFT_v1g150519 N
nLs.2.1.2.g07663 Litomosoides sigmodontis nLs.2.1.2.g07663 N
nOo.2.0.1.g04758 Onchocerca ochengi nOo.2.0.1.g04758 N
nOo.2.0.1.g09403 Onchocerca ochengi nOo.2.0.1.g09403 N
Ocbimv22010205m.g Octopus bimaculoides Ocbimv22010205m.g N
Ocbimv22024994m.g Octopus bimaculoides Ocbimv22024994m.g N
OFLC_0000421701 Onchocerca flexuosa OFLC_0000421701 N
OFLC_0001211001 Onchocerca flexuosa OFLC_0001211001 N
Ogr05500 Ophisaurus gracilis Ogr05500 N
Ogr09559 Ophisaurus gracilis Ogr09559 N
Ogr19002 Ophisaurus gracilis Ogr19002 N
PEQ_0000993201 Parascaris equorum PEQ_0000993201 N
PHUM265030 Pediculus humanus PHUM265030 I
PPA08598 Pristionchus pacificus PPA08598 N
PPA25533 Pristionchus pacificus PPA25533 N
PPAI003186 Phlebotomus papatasi PPAI003186 N
PPAI007203 Phlebotomus papatasi PPAI007203 N
PXEA_0000455101 Protopolystoma xenopodis PXEA_0000455101 N
PXEA_0000638901 Protopolystoma xenopodis PXEA_0000638901 N
PXEA_0003648301 Protopolystoma xenopodis PXEA_0003648301 N
RPRC002486 Rhodnius prolixus RPRC002486 I
RPRC010976 Rhodnius prolixus RPRC010976 I
SBAD_0000398601 Soboliphyme baturini SBAD_0000398601 N
SBAD_0000495201 Soboliphyme baturini SBAD_0000495201 N
scaffold493-EXSNAP2012.8 Pristionchus exspectatus scaffold493-EXSNAP2012.8 N
scaffold958-EXSNAP2012.2 Pristionchus exspectatus scaffold958-EXSNAP2012.2 N
Sjc_0051970 Schistosoma japonicum Sjc_0051970 N
SMAR012377 Strigamia maritima SMAR012377 N
Smp_136900 Schistosoma mansoni Smp_136900 N
Smp_169500 Schistosoma mansoni Smp_169500 N
SMTD_0001030501 Schistosoma mattheei SMTD_0001030501 N
SMTD_0001153001 Schistosoma mattheei SMTD_0001153001 N
SNAPOd2T00002147001 Oikopleura dioica SNAPOd2T00002147001 N
snap_masked-nMf.1.1.scaf17493-processed-gene-0.1 Meloidogyne floridensis snap_masked-nMf.1.1.scaf17493-processed-gene-0.1 N
SPAL_0000530600 Strongyloides papillosus SPAL_0000530600 N
SPER_0001567701 Spirometra erinaceieuropaei SPER_0001567701 N
SPER_0001728701 Spirometra erinaceieuropaei SPER_0001728701 N
SPER_0002183801 Spirometra erinaceieuropaei SPER_0002183801 N
SPER_0003632001 Spirometra erinaceieuropaei SPER_0003632001 N
SPER_0003833401 Spirometra erinaceieuropaei SPER_0003833401 N
SROB_0001224301 Schistosoma rodhaini SROB_0001224301 N
SSLN_0000633001 Schistocephalus solidus SSLN_0000633001 N
SVUK_0001081801 Strongylus vulgaris SVUK_0001081801 N
T265_06348 Opisthorchis viverrini T265_06348 N
T265_10782 Opisthorchis viverrini T265_10782 N
T265_14387 Opisthorchis viverrini T265_14387 N
Tal_R004953 Tyto alba Tal_R004953 N
Tal_R008067 Tyto alba Tal_R008067 I
TCNE_0000939301 Toxocara canis TCNE_0000939301 N
tetur02g09110 Tetranychus urticae tetur02g09110 N
TRE_0000162501 Trichobilharzia regenti TRE_0000162501 N
TRE_0000179101 Trichobilharzia regenti TRE_0000179101 N
TTAC_0000146101 Hydatigera taeniaeformis TTAC_0000146101 N
TTAC_0000574501 Hydatigera taeniaeformis TTAC_0000574501 N
WUBG_02755 Wuchereria bancrofti WUBG_02755 N
WUBG_03180 Wuchereria bancrofti WUBG_03180 N
WUBG_09511 Wuchereria bancrofti WUBG_09511 N
hoxb2.S Xenopus laevis XB-GENE-478530 I
hoxa11.S Xenopus laevis XB-GENE-483246 I
hoxc6.S Xenopus laevis XB-GENE-865143 I
YQE_10731 Dendroctonus ponderosae YQE_10731 N