Sakowv30020537m.g (Saccoglossus kowalevskii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Sakowv30020537m.g T227901_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.840 0.895
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.840 0.895
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.840 0.895
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.840 0.895
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.840 0.895
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.840 0.895
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.809 0.877
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.800 0.842
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.800 0.842
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.800 0.842
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.800 0.842
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.800 0.842
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.800 0.842
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.789 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23939825_peptide Homeodomain 139 198
23939826_peptide Homeodomain 139 198

Links

Other Homeodomain family TFs
Other Saccoglossus kowalevskii TFs

388 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB006664 Anopheles albimanus AALB006664 N
AATE018011 Anopheles atroparvus AATE018011 I
ACAC_0000050701 Angiostrongylus cantonensis ACAC_0000050701 I
ACEP14857 Atta cephalotes ACEP14857 I
ACOC_0000924001 Angiostrongylus costaricensis ACOC_0000924001 I
ACOM027979 Anopheles coluzzii ACOM027979 I
ADAC002899 Anopheles darlingi ADAC002899 N
AFAF001557 Anopheles farauti AFAF001557 I
AFAF020264 Anopheles farauti AFAF020264 I
AMAM003778 Anopheles maculatus AMAM003778 I
AMAM005266 Anopheles maculatus AMAM005266 N
AMAM009924 Anopheles maculatus AMAM009924 I
ANCCEY_04739 Ancylostoma ceylanicum ANCCEY_04739 I
ANCDUO_13968 Ancylostoma duodenale ANCDUO_13968 I
ASU_06642 Ascaris suum ASU_06642 I
BXY_0842900 Bursaphelenchus xylophilus BXY_0842900 I
CBG03854 Caenorhabditis briggsae CBG03854 I
CBN09920 Caenorhabditis brenneri CBN09920 I
CBN18838 Caenorhabditis brenneri CBN18838 I
CJA03417 Caenorhabditis japonica CJA03417 I
CLEC010165 Cimex lectularius CLEC010165 N
Cmyd_10014184 Chelonia mydas Cmyd_10014184 I
CPIJ018573 Culex quinquefasciatus CPIJ018573 N
CpipJ_CPIJ018573 Culex pipiens CpipJ_CPIJ018573 N
CRE08084 Caenorhabditis remanei CRE08084 I
DICVIV_01967 Dictyocaulus viviparus DICVIV_01967 I
ECANG7_03405 Echinococcus canadensis ECANG7_03405 N
EmuJ_000598400 Echinococcus multilocularis EmuJ_000598400 N
ENSBTAG00000003540 Bos taurus ENSBTAG00000003540 I
MYT1 Erinaceus europaeus ENSEEUG00000004157 N
MYT1L Homo sapiens ENSG00000186487 I
MYT1L Macaca mulatta ENSMMUG00000009310 I
EVEC_0001307101 Enterobius vermicularis EVEC_0001307101 I
GI16394 Drosophila mojavensis FBgn0139142 I
GL14771 Drosophila persimilis FBgn0152375 I
CG43689 Drosophila melanogaster FBgn0263772 I
Hba_17025 Heterorhabditis bacteriophora Hba_17025 I
HDID_0000016901 Hymenolepis diminuta HDID_0000016901 N
HelroG85268 Helobdella robusta HelroG85268 I
HHAL001110-PA Halyomorpha halys HHAL001110-PA I
ISCW018799 Ixodes scapularis ISCW018799 I
L596_g1281 Steinernema carpocapsae L596_g1281 I
L889_g28085 Steinernema feltiae L889_g28085 I
L893_g1446 Steinernema glaseri L893_g1446 I
LCUP002242 Lucilia cuprina LCUP002242 I
MCOS_0000008701 Mesocestoides corti MCOS_0000008701 N
Minc05804 Meloidogyne incognita Minc05804 I
NBR_0001165301 Nippostrongylus brasiliensis NBR_0001165301 I
nDi.2.2.2.g06992 Dirofilaria immitis nDi.2.2.2.g06992 I
NECAME_10938 Necator americanus NECAME_10938 I
nLs.2.1.2.g09672 Litomosoides sigmodontis nLs.2.1.2.g09672 I
nRc.2.0.1.g21954 Romanomermis culicivorax nRc.2.0.1.g21954 N
Ocbimv22028295m.g Octopus bimaculoides Ocbimv22028295m.g I
Ocbimv22028296m.g Octopus bimaculoides Ocbimv22028296m.g N
OESDEN_24201 Oesophagostomum dentatum OESDEN_24201 I
PTRK_0001788400 Parastrongyloides trichosuri PTRK_0001788400 I
RSKR_0000214800 Rhabditophanes kr3021 RSKR_0000214800 I
SBAD_0000885801 Soboliphyme baturini SBAD_0000885801 N
SMU15021651 Schmidtea mediterranea SMU15021651 N
SMU15025640 Schmidtea mediterranea SMU15025640 N
SMU15028607 Schmidtea mediterranea SMU15028607 I
SMUV_0000666101 Syphacia muris SMUV_0000666101 I
SPAL_0000489100 Strongyloides papillosus SPAL_0000489100 I
SPAL_0000892700 Strongyloides papillosus SPAL_0000892700 I
SSLN_0001285301 Schistocephalus solidus SSLN_0001285301 N
SSTP_0000574400 Strongyloides stercoralis SSTP_0000574400 I
SVE_1935100 Strongyloides venezuelensis SVE_1935100 I
SVE_1952800 Strongyloides venezuelensis SVE_1952800 I
TASK_0000444001 Taenia asiatica TASK_0000444001 N
TELCIR_22038 Teladorsagia circumcincta TELCIR_22038 I
TELCIR_26151 Teladorsagia circumcincta TELCIR_26151 I
TTAC_0000856801 Hydatigera taeniaeformis TTAC_0000856801 N
ztf-11 Caenorhabditis elegans WBGene00009939 D
WBGene00238210 Onchocerca volvulus WBGene00238210 I
YQE_11977 Dendroctonus ponderosae YQE_11977 I