CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Sakowv30044972m.g *(Saccoglossus kowalevskii)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	Sakowv30044972m.g	T228008_2.00	JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Dbx1 M00451_2.00	Mus musculus	WTTAATTA	TAATTAAW	PBM Berger et al.(2008) Dbx1_3486	0.862	0.911
Dbx2 M00499_2.00	Mus musculus	NNDTNNN	NNNAHNN	PBM Berger et al.(2008) Dbx2_3487	0.826	0.839
Dbx M02128_2.00	Drosophila melanogaster	WTTAATTA	TAATTAAW	PBM Weirauch et al.(2014) pTH6051	0.822	0.893
Dbx M06550_2.00	Drosophila melanogaster	TTWATKA	TMATWAA	B1H Mathelier et al.(2014) MA0174.1	0.822	0.893
H2.0 M06489_2.00	Drosophila melanogaster	WTWATDA	THATWAW	B1H Mathelier et al.(2014) MA0448.1	0.737	0.750
H2.0 M06250_2.00	Drosophila melanogaster	TWWWWDA	THAWWWA	B1H Zhu et al.(2011) H2.0_Cell_FBgn0001170	0.737	0.750
H2.0 M06251_2.00	Drosophila melanogaster	WTWATTRN	NYAATWAW	B1H Zhu et al.(2011) H2.0_SOLEXA_FBgn0001170	0.737	0.750
Hlx M00485_2.00	Mus musculus	NNNAWND	HNWTNNN	PBM Berger et al.(2008) Hlx1_2350	0.733	0.696
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
23920354_peptide	Homeodomain	169	224	LRRAVFSDAQRKGLEKKFQQQKYISKPDRRKLASKLGLKDSQVKIWFQNRRMKWRN

Links
Other Homeodomain family TFs
Other *Saccoglossus kowalevskii* TFs