Cagra.1561s0012 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.1561s0012 T228213_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.867 1.000
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.867 1.000
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.867 1.000
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.867 1.000
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.813 0.825
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.813 0.807
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.813 0.789
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.813 0.789
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.813 0.789
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.796 0.772
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.796 0.772
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.796 0.772
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.796 0.772
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.796 0.772
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.796 0.772
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.723 0.667
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.723 0.667
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.722 0.684
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.722 0.684
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.718 0.649
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.718 0.649
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.657 0.807
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.657 0.807
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.637 0.772
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.637 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1561s0012.1.p Homeodomain 67 123

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

800 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30078.m002288 Ricinus communis 30078.m002288 I 0.000
AAEL001321 Aedes aegypti AAEL001321 I 0.000
Aan_R013725 Calypte anna Aan_R013725 I 0.000
Afo_R001855 Aptenodytes forsteri Afo_R001855 I 0.000
Aquca_030_00076 Aquilegia coerulea Aquca_030_00076 I 0.000
DPA Arabidopsis thaliana AT5G02470 I 0.000
aug1.119_g21398 Bigelowiella natans aug1.119_g21398 N 0.000
augustus_masked-nMf.1.1.scaf26567-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf26567-processed-gene-0.0 I 0.000
augustus_masked-nMf.1.1.scaf34489-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf34489-processed-gene-0.0 I 0.000
BGIOSGA031841 Oryza indica BGIOSGA031841 I 0.000
Bo2g004050 Brassica oleracea Bo2g004050 I 0.000
Bo3g001900 Brassica oleracea Bo3g001900 I 0.000
Bo3g002330 Brassica oleracea Bo3g002330 I 0.000
Bo9g183580 Brassica oleracea Bo9g183580 I 0.000
Bostr.2128s0112 Boechera stricta Bostr.2128s0112 I 0.000
Bostr.6251s0027 Boechera stricta Bostr.6251s0027 I 0.000
Bra005763 Brassica rapa Bra005763 I 0.000
Bra009586 Brassica rapa Bra009586 I 0.000
BRADI3G27520 Brachypodium distachyon BRADI3G27520 I 0.000
Cagra.0487s0001 Capsella grandiflora Cagra.0487s0001 I 0.000
Cagra.4354s0002 Capsella grandiflora Cagra.4354s0002 I 0.000
Carubv10001164m.g Capsella rubella Carubv10001164m.g I 0.000
Carubv10001623m.g Capsella rubella Carubv10001623m.g I 0.000
cassava23535.valid.m1 Manihot esculenta cassava23535.valid.m1 I 0.000
cassava31269.valid.m1 Manihot esculenta cassava31269.valid.m1 I 0.000
CBN26337 Caenorhabditis brenneri CBN26337 I 0.000
CJA13523 Caenorhabditis japonica CJA13523 I 0.000
CRE22580 Caenorhabditis remanei CRE22580 I 0.000
DME_0000497501 Dracunculus medinensis DME_0000497501 I 0.000
ENSAPLG00000005664 Anas platyrhynchos ENSAPLG00000005664 I 0.000
ENSMEUG00000012534 Macropus eugenii ENSMEUG00000012534 I 0.000
ENSPMAG00000000488 Petromyzon marinus ENSPMAG00000000488 I 0.000
ENSSHAG00000011293 Sarcophilus harrisii ENSSHAG00000011293 I 0.000
estExt_fgeneshCV_pg.C_10474 Chlorella vulgaris estExt_fgeneshCV_pg.C_10474 I 0.000
estExt_Genemark1.C_10169 Coccomyxa subellipsoidea C169 estExt_Genemark1.C_10169 I 0.000
EuGene.0000040347 Micromonas pusilla EuGene.0000040347 I 0.000
evm.TU.contig_32800 Carica papaya evm.TU.contig_32800 I 0.000
e_gw1.37.234.1 Physcomitrella patens e_gw1.37.234.1 I 0.000
e_gw1.74.211.1 Physcomitrella patens e_gw1.74.211.1 I 0.000
F775_18467 Aegilops tauschii F775_18467 I 0.000
GH20730 Drosophila grimshawi FBgn0128193 I 0.000
GI20813 Drosophila mojavensis FBgn0143548 I 0.000
GJ20546 Drosophila virilis FBgn0207686 I 0.000
GK22007 Drosophila willistoni FBgn0223992 I 0.000
fgenesh1_pg.22__26 Bigelowiella natans fgenesh1_pg.22__26 N 0.000
DPA Arabidopsis lyrata fgenesh2_kg.6__159__AT5G02470.2 I 0.000
DPB Arabidopsis lyrata fgenesh2_kg.6__250__AT5G03415.1 I 0.000
fgenesh2_pg.C_Chr_02000142 Micromonas sp RCC299 fgenesh2_pg.C_Chr_02000142 I 0.000
Gorai.007G375800 Gossypium raimondii Gorai.007G375800 I 0.000
GRMZM2G063387 Zea mays GRMZM2G063387 I 0.000
GRMZM2G086072 Zea mays GRMZM2G086072 I 0.000
GSMUA_Achr5G12510_001 Musa acuminata GSMUA_Achr5G12510_001 I 0.000
GUITHDRAFT_133922 Guillardia theta GUITHDRAFT_133922 I 0.000
gw1.2.505.1 Chlorella NC64A gw1.2.505.1 I 0.000
L892_g29039 Steinernema scapterisci L892_g29039 I 0.000
LjSGA_030786.1 Lotus japonicus LjSGA_030786.1 I 0.000
Lus10014423.g Linum usitatissimum Lus10014423.g I 0.000
Lus10023926.g Linum usitatissimum Lus10023926.g I 0.000
MDOA008269 Musca domestica MDOA008269 I 0.000
MDP0000316055 Malus domestica MDP0000316055 I 0.000
OB10G18700 Oryza brachyantha OB10G18700 I 0.000
OBART10G11350 Oryza barthii OBART10G11350 I 0.000
OGLUM10G11120 Oryza glumaepatula OGLUM10G11120 I 0.000
Ogr00419 Ophisaurus gracilis Ogr00419 I 0.000
OLONG_008291 Oryza longistaminata OLONG_008291 I 0.000
OMERI10G08380 Oryza meridionalis OMERI10G08380 I 0.000
ONIVA10G10530 Oryza nivara ONIVA10G10530 I 0.000
OPUNC10G09700 Oryza punctata OPUNC10G09700 I 0.000
ORGLA10G0100200 Oryza glaberrima ORGLA10G0100200 I 0.000
ORUFI10G11860 Oryza rufipogon ORUFI10G11860 I 0.000
OS10G0440100 Oryza sativa OS10G0440100 I 0.000
Pavir.Ia04201 Panicum virgatum Pavir.Ia04201 I 0.000
Pavir.Ib00301 Panicum virgatum Pavir.Ib00301 I 0.000
PGSC0003DMG400008373 Solanum tuberosum PGSC0003DMG400008373 I 0.000
Pm002727 Prunus mume Pm002727 I 0.000
POPTR_0006s12620 Populus trichocarpa POPTR_0006s12620 I 0.000
POPTR_0016s09640 Populus trichocarpa POPTR_0016s09640 I 0.000
PRUPE_ppa021369mg Prunus persica PRUPE_ppa021369mg I 0.000
SapurV1A.0584s0010 Salix purpurea SapurV1A.0584s0010 I 0.000
SapurV1A.1230s0050 Salix purpurea SapurV1A.1230s0050 I 0.000
Sb01g046810 Sorghum bicolor Sb01g046810 I 0.000
Si036124m.g Setaria italica Si036124m.g I 0.000
Solyc10g078430.1 Solanum lycopersicum Solyc10g078430.1 I 0.000
Tal_R001534 Tyto alba Tal_R001534 I 0.000
TC010400 Tribolium castaneum TC010400 I 0.000
TCM_021956 Theobroma cacao TCM_021956 I 0.000
Thhalv10014118m.g Eutrema salsugineum Thhalv10014118m.g I 0.000
Thhalv10014274m.g Eutrema salsugineum Thhalv10014274m.g I 0.000
Traes_3AL_D7DE23839 Triticum aestivum Traes_3AL_D7DE23839 I 0.000
Traes_3DL_1E9DECCEA Triticum aestivum Traes_3DL_1E9DECCEA I 0.000
TRIUR3_33333 Triticum urartu TRIUR3_33333 I 0.000
TVAG_077130 Trichomonas vaginalis TVAG_077130 I 0.000
DPA Vitis vinifera VIT_08s0007g00170 I 0.000
dpl-1 Caenorhabditis elegans WBGene00001061 D 0.000