Carubv10002574m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10002574m.g T228274_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.809 0.825
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.782 0.702
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.782 0.702
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.772 0.702
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.772 0.702
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.762 0.719
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.762 0.719
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.762 0.719
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.747 0.649
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.747 0.649
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.732 0.649
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.732 0.649
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.730 0.632
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.730 0.632
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.730 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002574m Homeodomain 25 81

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

613 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB04928.1 Alternaria brassicicola AB04928.1 I
ACRE_081720 Acremonium chrysogenum ACRE_081720 I
ARB_02947 Arthroderma benhamiae ARB_02947 I
AUEXF2481DRAFT_26753 Aureobasidium subglaciale AUEXF2481DRAFT_26753 I
BAUCODRAFT_346869 Baudoinia compniacensis BAUCODRAFT_346869 I
BBA_02826 Beauveria bassiana BBA_02826 I
Bcin13g02900 Botrytis cinerea Bcin13g02900 I
BDDG_08552 Blastomyces dermatitidis BDDG_08552 I
BGHDH14_bgh00563 Blumeria graminis BGHDH14_bgh00563 I
ACLA_081960 Aspergillus clavatus CADACLAG00007570 I
CADAFLAG00003022 Aspergillus flavus CADAFLAG00003022 I
AFUA_6G07800 Aspergillus fumigatus CADAFUAG00001843 I
CADANGAG00008606 Aspergillus niger CADANGAG00008606 I
ANIA_01927 Aspergillus nidulans CADANIAG00008587 I
CADAORAG00000832 Aspergillus oryzae CADAORAG00000832 I
ATEG_05884 Aspergillus terreus CADATEAG00001041 I
NFIA_053460 Neosartorya fischeri CADNFIAG00004356 I
CCM_04464 Cordyceps militaris CCM_04464 I
CFIO01_03460 Colletotrichum fioriniae CFIO01_03460 I
CGGC5_13834 Colletotrichum gloeosporioides CGGC5_13834 I
CH063_10711 Colletotrichum higginsianum CH063_10711 I
CHGG_08910 Chaetomium globosum CHGG_08910 I
CIMG_01271 Coccidioides immitis CIMG_01271 I
Cob_10943 Colletotrichum orbiculare Cob_10943 I
COCC4DRAFT_191517 Bipolaris maydis COCC4DRAFT_191517 I
COCCADRAFT_6430 Bipolaris zeicola COCCADRAFT_6430 I
COCMIDRAFT_98079 Bipolaris oryzae COCMIDRAFT_98079 I
COCSADRAFT_187218 Bipolaris sorokiniana COCSADRAFT_187218 I
COCVIDRAFT_32096 Bipolaris victoriae COCVIDRAFT_32096 I
CPC735_051290 Coccidioides posadasii CPC735_051290 I
CPUR_03981 Claviceps purpurea CPUR_03981 I
CSUB01_07077 Colletotrichum sublineola CSUB01_07077 I
CTHT_0043170 Chaetomium thermophilum CTHT_0043170 I
DEHA2E16280g Debaryomyces hansenii DEHA2E16280g I
DOTSEDRAFT_67906 Dothistroma septosporum DOTSEDRAFT_67906 I
estExt_fgenesh1_pg.C_110067 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_110067 I
estExt_fgenesh2_pg.C_60189 Neurospora discreta estExt_fgenesh2_pg.C_60189 I
EURHEDRAFT_515455 Aspergillus ruber EURHEDRAFT_515455 I
EV44_g2709 Erysiphe necator EV44_g2709 I
e_gw1.2.1285.1 Nectria haematococca e_gw1.2.1285.1 I
fgenesh1_pg.00118_#_483 Aspergillus carbonarius fgenesh1_pg.00118_#_483 I
fgenesh1_pg.C_scaffold_1001721 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_1001721 I
FGRRES_08392 Fusarium graminearum FGRRES_08392 I
FOXG_03429 Fusarium oxysporum FOXG_03429 I
FPSE_09008 Fusarium pseudograminearum FPSE_09008 I
GLRG_10614 Colletotrichum graminicola GLRG_10614 I
GMDG_02925 Pseudogymnoascus destructans GMDG_02925 I
GSTUM_00006957001 Tuber melanosporum GSTUM_00006957001 I
H101_07442 Trichophyton interdigitale H101_07442 I
H102_07413 Trichophyton rubrum H102_07413 I
H105_07443 Trichophyton soudanense H105_07443 I
HCBG_03081 Histoplasma capsulatum HCBG_03081 I
HMPREF1624_02358 Sporothrix schenckii HMPREF1624_02358 I
KUCA_T00003643001 Kuraishia capsulata KUCA_T00003643001 I
LEMA_P014880.1 Leptosphaeria maculans LEMA_P014880.1 I
M437DRAFT_54913 Aureobasidium melanogenum M437DRAFT_54913 I
M438DRAFT_268526 Aureobasidium pullulans M438DRAFT_268526 I
MAC_04732 Metarhizium acridum MAC_04732 I
MAJ_00029 Metarhizium majus MAJ_00029 I
MAM_00669 Metarhizium album MAM_00669 I
MAPG_11120 Magnaporthe poae MAPG_11120 I
MBM_06383 Marssonina brunnea MBM_06383 I
MBR_02609 Metarhizium brunneum MBR_02609 I
MCYG_00495 Microsporum canis MCYG_00495 I
MCYG_00495 Arthroderma otae MCYG_00495 I
MGG_00934 Magnaporthe oryzae MGG_00934 I
MGU_00406 Metarhizium guizhouense MGU_00406 I
MGYG_01468 Microsporum gypseum MGYG_01468 I
MPH_10060 Macrophomina phaseolina MPH_10060 I
MYCFIDRAFT_213699 Pseudocercospora fijiensis MYCFIDRAFT_213699 I
Mycgr3G109078 Zymoseptoria tritici Mycgr3G109078 I
MYCTH_2307005 Myceliophthora thermophila MYCTH_2307005 I
NCU04827 Neurospora crassa NCU04827 D
NechaG35283 Fusarium solani NechaG35283 I
NEUTE1DRAFT_50286 Neurospora tetrasperma NEUTE1DRAFT_50286 I
OCS_00083 Ophiocordyceps sinensis OCS_00083 I
OIDMADRAFT_198696 Oidiodendron maius OIDMADRAFT_198696 I
PAAG_01320 Paracoccidioides sp lutzii PAAG_01320 I
PABG_01889 Paracoccidioides brasiliensis PABG_01889 I
PAS_chr1-3_0233 Komagataella pastoris PAS_chr1-3_0233 I
Pc12g09500 Penicillium chrysogenum Pc12g09500 I
PCH_Pc12g09500 Penicillium rubens PCH_Pc12g09500 I
PDE_08867 Penicillium oxalicum PDE_08867 I
PDIP_36670 Penicillium digitatum PDIP_36670 I
PEX1_040030 Penicillium expansum PEX1_040030 I
PFICI_14300 Pestalotiopsis fici PFICI_14300 I
PITC_095760 Penicillium italicum PITC_095760 I
PMAA_030710 Talaromyces marneffei PMAA_030710 I
PMAA_030710 Penicillium marneffei PMAA_030710 I
PODANS_4_9410 Podospora anserina PODANS_4_9410 I
PTRG_01524 Pyrenophora triticirepentis PTRG_01524 I
PTT_09455 Pyrenophora teres PTT_09455 I
PVAR5_6206 Byssochlamys spectabilis PVAR5_6206 I
S40285_02675 Stachybotrys chlorohalonata S40285_02675 I
S40288_06142 Stachybotrys chartarum S40288_06142 I
SAPIO_CDS10892 Scedosporium apiospermum SAPIO_CDS10892 I
SEPMUDRAFT_76258 Sphaerulina musiva SEPMUDRAFT_76258 I
SETTUDRAFT_170602 Setosphaeria turcica SETTUDRAFT_170602 I
SMAC_03466 Sordaria macrospora SMAC_03466 I
SPBR_02265 Sporothrix brasiliensis SPBR_02265 I
SS1G_09555 Sclerotinia sclerotiorum SS1G_09555 I
TEQG_06861 Trichophyton equinum TEQG_06861 I
TESG_04227 Trichophyton tonsurans TESG_04227 I
THITE_2037048 Thielavia terrestris THITE_2037048 I
TRIATDRAFT_138069 Trichoderma atroviride TRIATDRAFT_138069 I
TRIREDRAFT_5927 Trichoderma reesei TRIREDRAFT_5927 I
TRIVIDRAFT_63912 Trichoderma virens TRIVIDRAFT_63912 I
TRV_00539 Trichophyton verrucosum TRV_00539 I
TSTA_067480 Talaromyces stipitatus TSTA_067480 I
U727_00433560451 Penicillium solitum U727_00433560451 I
UV8b_2614 Ustilaginoidea virens UV8b_2614 I
V499_02600 Pseudogymnoascus pannorum V499_02600 I
VDAG_07458 Verticillium dahliae VDAG_07458 I
VDBG_09303 Verticillium albo atrum VDBG_09303 I
VDBG_09303 Verticillium alfalfae VDBG_09303 I
VHEMI06723 Torrubiella hemipterigena VHEMI06723 I
W97_07856 Coniosporium apollinis W97_07856 I
X797_000651 Metarhizium robertsii X797_000651 I
XP_002489576.1 Pichia pastoris XP_002489576.1 I