gene17249-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene17249-v1.0-hybrid T228614_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.679 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna17249.1-v1.0-hybrid Homeodomain 469 525

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000013250 Ailuropoda melanoleuca ENSAMEG00000013250 I 0.000
SALL4 Bos taurus ENSBTAG00000003101 I 0.000
ENSCAFG00000011738 Canis familiaris ENSCAFG00000011738 I 0.000
ENSCJAG00000000591 Callithrix jacchus ENSCJAG00000000591 I 0.000
ENSCSAG00000015269 Chlorocebus sabaeus ENSCSAG00000015269 I 0.000
SALL4 Dasypus novemcinctus ENSDNOG00000040633 I 0.000
SALL4 Erinaceus europaeus ENSEEUG00000003649 I 0.000
SALL4 Felis catus ENSFCAG00000002822 I 0.000
SALL4 Homo sapiens ENSG00000101115 D 0.000
SALL4 Gorilla gorilla ENSGGOG00000001832 I 0.000
SALL4 Loxodonta africana ENSLAFG00000004309 I 0.000
SALL4 Microcebus murinus ENSMICG00000000027 I 0.000
ENSMLUG00000007060 Myotis lucifugus ENSMLUG00000007060 I 0.000
ENSMLUG00000008405 Myotis lucifugus ENSMLUG00000008405 I 0.000
SALL4 Macaca mulatta ENSMMUG00000003870 I 0.000
ENSMPUG00000017543 Mustela putorius furo ENSMPUG00000017543 I 0.000
Sall4 Mus musculus ENSMUSG00000027547 D 0.000
ENSNLEG00000007013 Nomascus leucogenys ENSNLEG00000007013 I 0.000
SALL4 Oryctolagus cuniculus ENSOCUG00000011797 I 0.000
SALL4 Otolemur garnettii ENSOGAG00000013799 I 0.000
SALL4 Ochotona princeps ENSOPRG00000011640 I 0.000
ENSP00000217086 Macaca fascicularis ENSP00000217086 I 0.000
ENSPANG00000021792 Papio anubis ENSPANG00000021792 I 0.000
ENSPPYG00000011138 Pongo abelii ENSPPYG00000011138 I 0.000
SALL4 Pan troglodytes ENSPTRG00000013631 I 0.000
SALL4 Pteropus vampyrus ENSPVAG00000002075 I 0.000
Sall4 Rattus norvegicus ENSRNOG00000050035 I 0.000
SALL4 Sus scrofa ENSSSCG00000007479 I 0.000
ENSSTOG00000025002 Ictidomys tridecemlineatus ENSSTOG00000025002 I 0.000
ENSTSYG00000007359 Tarsius syrichta ENSTSYG00000007359 I 0.000