Gorai.003G143600 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.003G143600 T228692_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.810 0.638
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.638 0.574
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.426
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.426
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.426
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.426
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.003G143600.1 Homeodomain 484 533
Gorai.003G143600.2 Homeodomain 484 533

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

1005 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008653 Calypte anna Aan_R008653 N 0.000
Afo_R011068 Aptenodytes forsteri Afo_R011068 N 0.000
Alligator_sinensis_CCG012514.1 Alligator sinensis Alligator_sinensis_CCG012514.1 N 0.000
Brh_R008738 Buceros rhinoceros Brh_R008738 N 0.000
CapteG80670 Capitella teleta CapteG80670 N 0.000
Cmyd_10007197 Chelonia mydas Cmyd_10007197 N 0.000
ASCL4 Anolis carolinensis ENSACAG00000014904 N 0.000
ENSAMXG00000025834 Astyanax mexicanus ENSAMXG00000025834 N 0.000
ENSAPLG00000010091 Anas platyrhynchos ENSAPLG00000010091 N 0.000
ASCL4 Bos taurus ENSBTAG00000046402 N 0.000
ASCL4 Canis familiaris ENSCAFG00000029147 N 0.000
ENSCSAG00000018942 Chlorocebus sabaeus ENSCSAG00000018942 N 0.000
ASCL4 Dasypus novemcinctus ENSDNOG00000012573 N 0.000
ASCL4 Erinaceus europaeus ENSEEUG00000010344 N 0.000
ENSFALG00000013339 Ficedula albicollis ENSFALG00000013339 N 0.000
ASCL4 Homo sapiens ENSG00000187855 N 0.000
ASCL4 Gallus gallus ENSGALG00000019304 N 0.000
ASCL4 Gorilla gorilla ENSGGOG00000025905 N 0.000
ASCL4 Loxodonta africana ENSLAFG00000004655 N 0.000
ASCL4 Meleagris gallopavo ENSMGAG00000012814 N 0.000
ASCL4 Myotis lucifugus ENSMLUG00000023526 N 0.000
ENSMMUG00000015552 Macaca mulatta ENSMMUG00000015552 N 0.000
ASCL4 Otolemur garnettii ENSOGAG00000024863 N 0.000
ASCL4 Ochotona princeps ENSOPRG00000003533 N 0.000
ENSP00000345420-D1 Bos grunniens ENSP00000345420-D1 N 0.000
ENSPANG00000003357 Papio anubis ENSPANG00000003357 N 0.000
ASCL4 Procavia capensis ENSPCAG00000012491 N 0.000
ENSPSIG00000011827 Pelodiscus sinensis ENSPSIG00000011827 N 0.000
ASCL4 Pan troglodytes ENSPTRG00000005401 N 0.000
ASCL4 Pteropus vampyrus ENSPVAG00000001597 N 0.000
ASCL4 Sorex araneus ENSSARG00000004843 N 0.000
ASCL4 Sus scrofa ENSSSCG00000000159 N 0.000
ASCL4 Taeniopygia guttata ENSTGUG00000010960 N 0.000
ASCL4 Tursiops truncatus ENSTTRG00000011068 N 0.000
Gfo_R004637 Geospiza fortis Gfo_R004637 N 0.000
Ogr16121 Ophisaurus gracilis Ogr16121 N 0.000
Pvit_09755 Pogona vitticeps Pvit_09755 N 0.000
Sakowv30004611m.g Saccoglossus kowalevskii Sakowv30004611m.g N 0.000
Tal_R012347 Tyto alba Tal_R012347 N 0.000
XP_002940370 Xenopus tropicalis XP_002940370 N 0.000