Gorai.007G207200 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.007G207200 T228736_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.838 0.688
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.562
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.438
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.438
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.438
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.438
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G207200.1 Homeodomain 572 622
Gorai.007G207200.2 Homeodomain 572 622

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

1013 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O5_02185 Cladophialophora psammophila A1O5_02185 N 0.000
A1O7_07617 Cladophialophora yegresii A1O7_07617 N 0.000
A1O9_02587 Exophiala aquamarina A1O9_02587 N 0.000
BDDG_02980 Blastomyces dermatitidis BDDG_02980 N 0.000
ACLA_021680 Aspergillus clavatus CADACLAG00003021 N 0.000
AFUA_1G13750 Aspergillus fumigatus CADAFUAG00007079 N 0.000
CADANGAG00007007 Aspergillus niger CADANGAG00007007 N 0.000
ATEG_00582 Aspergillus terreus CADATEAG00007537 N 0.000
NFIA_011750 Neosartorya fischeri CADNFIAG00000778 N 0.000
CIMG_03383 Coccidioides immitis CIMG_03383 N 0.000
CPC735_008270 Coccidioides posadasii CPC735_008270 N 0.000
EPUS_00094 Endocarpon pusillum EPUS_00094 N 0.000
fgenesh1_pg.00083_#_396 Aspergillus carbonarius fgenesh1_pg.00083_#_396 N 0.000
G647_02466 Cladophialophora carrionii G647_02466 N 0.000
HCBG_03883 Histoplasma capsulatum HCBG_03883 N 0.000
OIDMADRAFT_81970 Oidiodendron maius OIDMADRAFT_81970 N 0.000
PAAG_12332 Paracoccidioides sp lutzii PAAG_12332 N 0.000
PABG_02440 Paracoccidioides brasiliensis PABG_02440 N 0.000
PDE_00230 Penicillium oxalicum PDE_00230 N 0.000
PMAA_067070 Talaromyces marneffei PMAA_067070 N 0.000
PMAA_067070 Penicillium marneffei PMAA_067070 N 0.000
PV04_08090 Capronia semiimmersa PV04_08090 N 0.000
PV05_09041 Exophiala xenobiotica PV05_09041 N 0.000
PV06_02231 Exophiala oligosperma PV06_02231 N 0.000
PV07_11807 Cladophialophora immunda PV07_11807 N 0.000
PV08_11535 Exophiala spinifera PV08_11535 N 0.000
PV10_02629 Exophiala mesophila PV10_02629 N 0.000
PV11_07301 Exophiala sideris PV11_07301 N 0.000
PVAR5_5233 Byssochlamys spectabilis PVAR5_5233 N 0.000
SBOR_9986 Sclerotinia borealis SBOR_9986 N 0.000
TSTA_087090 Talaromyces stipitatus TSTA_087090 N 0.000
Z517_03216 Fonsecaea pedrosoi Z517_03216 N 0.000
Z518_06914 Rhinocladiella mackenziei Z518_06914 N 0.000
Z519_01293 Cladophialophora bantiana Z519_01293 N 0.000