Gorai.007G306500 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.007G306500 T228740_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.723 0.683
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.719 0.634
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.719 0.634
HOS66
M02156_2.00 		Oryza sativa
NNNNDHNN
NNDHNNNN		 PBM
Weirauch et al.(2014)
pTH8332 		0.706 0.659
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.695 0.463
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.695 0.463
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.695 0.463
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.695 0.463
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.633 0.463
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.626 0.756
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.606 0.463
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G306500.1 Homeodomain 244 284

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

1242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF213 Bos taurus ENSBTAG00000026408 I 0.000
ENSBTAP00000037355-D1 Bos grunniens ENSBTAP00000037355-D1 I 0.000
ZNF213 Callithrix jacchus ENSCJAG00000015554 I 0.000
ZNF213 Cavia porcellus ENSCPOG00000000772 I 0.000
ENSCSAG00000010127 Chlorocebus sabaeus ENSCSAG00000010127 I 0.000
ZNF213 Dasypus novemcinctus ENSDNOG00000047465 I 0.000
Zfp213 Dipodomys ordii ENSDORG00000004372 I 0.000
ZNF213 Equus caballus ENSECAG00000009465 I 0.000
ZNF213 Felis catus ENSFCAG00000025735 I 0.000
ZNF213 Homo sapiens ENSG00000085644 D 0.000
ZNF213 Gorilla gorilla ENSGGOG00000012025 I 0.000
ENSLAFG00000010182 Loxodonta africana ENSLAFG00000010182 I 0.000
ZNF213 Microcebus murinus ENSMICG00000009093 I 0.000
ZNF213 Monodelphis domestica ENSMODG00000024568 I 0.000
Zfp213 Mus musculus ENSMUSG00000071256 I 0.000
ZNF213 Ornithorhynchus anatinus ENSOANG00000028662 I 0.000
ZNF213 Otolemur garnettii ENSOGAG00000003695 I 0.000
ENSP00000332155 Macaca fascicularis ENSP00000332155 I 0.000
ENSPANG00000022700 Papio anubis ENSPANG00000022700 I 0.000
ZNF213 Procavia capensis ENSPCAG00000012311 I 0.000
ENSPPYG00000007035 Pongo abelii ENSPPYG00000007035 I 0.000
ZNF213 Pan troglodytes ENSPTRG00000007687 I 0.000
ZNF213 Pteropus vampyrus ENSPVAG00000001471 I 0.000
Zfp213 Rattus norvegicus ENSRNOG00000021872 I 0.000
ENSSHAG00000017150 Sarcophilus harrisii ENSSHAG00000017150 I 0.000
ZNF213 Sus scrofa ENSSSCG00000007967 I 0.000
ENSSTOG00000003817 Ictidomys tridecemlineatus ENSSTOG00000003817 I 0.000
ZNF213 Tursiops truncatus ENSTTRG00000004055 I 0.000
Myotis_brandtii_ZNF213_10028064 Myotis brandtii Myotis_brandtii_ZNF213_10028064 I 0.000